RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 ITIH6Q6UXX5 1313 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 PNMA6FA0A0J9YX94 578 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 N4BP3O15049 544 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 MFAP3LO75121 409 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 SLU7O95391 586 aaKnown RBP12.43□□□□□ -0.42
SPG11-217ENST00000559511 TDP2O95551 362 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 CASP14P31944 242 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 TXKP42681 527 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 FXR1P51114 621 aaKnown RBP eCLIP12.43□□□□□ -0.42
SPG11-217ENST00000559511 ATP2B2Q01814 1243 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 KCTD1Q719H9 257 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 GIMAP8Q8ND71 665 aaPredicted RBP12.43□□□□□ -0.42
SPG11-217ENST00000559511 ERO1AQ96HE7 468 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 PRMT6Q96LA8 375 aaPredicted RBP12.43□□□□□ -0.42
SPG11-217ENST00000559511 CCDC17Q96LX7 622 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 CUEDC2Q9H467 287 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 PI4KBQ9UBF8 816 aa12.43□□□□□ -0.42
SPG11-217ENST00000559511 SPAG1Q07617 926 aa12.42□□□□□ -0.42
SPG11-217ENST00000559511 ORC2Q13416 577 aaPredicted RBP12.42□□□□□ -0.42
SPG11-217ENST00000559511 UBE2SQ16763 222 aa12.42□□□□□ -0.42
SPG11-217ENST00000559511 PPP4R3BQ5MIZ7 849 aa12.42□□□□□ -0.42
SPG11-217ENST00000559511 CREBRFQ8IUR6 639 aa12.42□□□□□ -0.42
SPG11-217ENST00000559511 CCDC94Q9BW85 323 aaPredicted RBP12.42□□□□□ -0.42
SPG11-217ENST00000559511 TRIM9Q9C026 710 aa12.42□□□□□ -0.42
SPG11-217ENST00000559511 MAGEF1Q9HAY2 307 aa12.42□□□□□ -0.42
SPG11-217ENST00000559511 USP17L10C9JJH3 530 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 H7C1D1 291 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 CALCRLQ16602 461 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 CCDC96Q2M329 555 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 RAD9BQ6WBX8 426 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 ZSCAN29Q8IWY8 852 aaPredicted RBP12.41□□□□□ -0.42
SPG11-217ENST00000559511 RIC8AQ9NPQ8 531 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 ZNF277Q9NRM2 450 aaPredicted RBP12.41□□□□□ -0.42
SPG11-217ENST00000559511 RNF225M0QZC1 329 aaPredicted RBP12.41□□□□□ -0.42
SPG11-217ENST00000559511 RAD17O75943 681 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 TNNI2P48788 182 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 CLK2P49760 499 aaKnown RBP12.41□□□□□ -0.42
SPG11-217ENST00000559511 GPATCH4Q5T3I0 446 aaKnown RBP12.41□□□□□ -0.42
SPG11-217ENST00000559511 RSBN1LQ6PCB5 846 aaPredicted RBP12.41□□□□□ -0.42
SPG11-217ENST00000559511 LARGE2Q8N3Y3 721 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 MTMR8Q96EF0 704 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 C7orf25Q9BPX7 421 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 MRPL44Q9H9J2 332 aaKnown RBP12.41□□□□□ -0.42
SPG11-217ENST00000559511 ATRNL1Q5VV63 1379 aa12.41□□□□□ -0.42
SPG11-217ENST00000559511 PSMD14O00487 310 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 ZBTB5O15062 677 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 FXR2P51116 673 aaKnown RBP eCLIP12.4□□□□□ -0.426e-8■■■□□ 16.7
SPG11-217ENST00000559511 GRB10Q13322 594 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 ELF2Q15723 593 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 TTI2Q6NXR4 508 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 PPP1R18Q6NYC8 613 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 TATDN1Q6P1N9 297 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 ANKRD20A12PQ8NF67 263 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 WDR24Q96S15 920 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 GMLQ99445 158 aa12.4□□□□□ -0.42
SPG11-217ENST00000559511 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.4□□□□□ -0.42
SPG11-217ENST00000559511 COL2A1P02458 1487 aaPredicted RBP12.4□□□□□ -0.42
SPG11-217ENST00000559511 A0A0U1RQJ8 604 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 GOLGA6L9A6NEM1 432 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 POTEMA6NI47 508 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 PSMA7O14818 248 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 ENTPD3O75355 529 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 VIL1P09327 827 aaKnown RBP12.4□□□□□ -0.43
SPG11-217ENST00000559511 FCER1AP12319 257 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 EEF2P13639 858 aaKnown RBP12.4□□□□□ -0.43
SPG11-217ENST00000559511 ASIC1P78348 528 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 PDE4DQ08499 809 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 STK4Q13043 487 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 SEMA3FQ13275 785 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 STIM1Q13586 685 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 CERKLQ49MI3 558 aaPredicted RBP12.4□□□□□ -0.43
SPG11-217ENST00000559511 CNGA4Q8IV77 575 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 ATRIPQ8WXE1 791 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 CALML4Q96GE6 196 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 PNMA5Q96PV4 448 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 NAA15Q9BXJ9 866 aaKnown RBP12.4□□□□□ -0.43
SPG11-217ENST00000559511 SRRTQ9BXP5 876 aaKnown RBP12.4□□□□□ -0.43
SPG11-217ENST00000559511 BLOC1S4Q9NUP1 217 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 LRWD1Q9UFC0 647 aa12.4□□□□□ -0.43
SPG11-217ENST00000559511 CCDC175P0C221 793 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 FECHP22830 423 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 GNG11P61952 73 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 UBXN1Q04323 297 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 CUL5Q93034 780 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 HPS3Q969F9 1004 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 TRIM47Q96LD4 638 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 DUSP9Q99956 384 aaKnown RBP12.39□□□□□ -0.43
SPG11-217ENST00000559511 NUDT12Q9BQG2 462 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 THAP9Q9H5L6 903 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 EXOC1Q9NV70 894 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 ADGRG1Q9Y653 693 aa12.39□□□□□ -0.43
SPG11-217ENST00000559511 SPDYE2BA6NHP3 402 aa12.38□□□□□ -0.43
SPG11-217ENST00000559511 ZBTB7AO95365 584 aa12.38□□□□□ -0.43
SPG11-217ENST00000559511 SPDYE6P0CI01 402 aa12.38□□□□□ -0.43
SPG11-217ENST00000559511 SIAH1Q8IUQ4 282 aa12.38□□□□□ -0.43
SPG11-217ENST00000559511 KIAA0895Q8NCT3 520 aa12.38□□□□□ -0.43
SPG11-217ENST00000559511 GJA10Q969M2 543 aa12.38□□□□□ -0.43
SPG11-217ENST00000559511 MKL1Q969V6 931 aa12.38□□□□□ -0.43
SPG11-217ENST00000559511 CCDC51Q96ER9 411 aa12.38□□□□□ -0.43
SPG11-217ENST00000559511 EEF2KMTQ96G04 330 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms