RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 WASH4PA8MWX3 477 aa8.76□□□□□ -1.01
RTF1-204ENST00000558117 GUCY2CP25092 1073 aa8.76□□□□□ -1.01
RTF1-204ENST00000558117 DNAJA1P31689 397 aaKnown RBP8.76□□□□□ -1.01
RTF1-204ENST00000558117 NAALADL2Q58DX5 795 aa8.76□□□□□ -1.01
RTF1-204ENST00000558117 NBPF12Q5TAG4 269 aaPredicted RBP8.76□□□□□ -1.01
RTF1-204ENST00000558117 UNC5AQ6ZN44 842 aa8.76□□□□□ -1.01
RTF1-204ENST00000558117 TSPYL5Q86VY4 417 aaPredicted RBP8.76□□□□□ -1.01
RTF1-204ENST00000558117 TAB3Q8N5C8 712 aaPredicted RBP8.76□□□□□ -1.01
RTF1-204ENST00000558117 FAM169BQ8N8A8 192 aa8.76□□□□□ -1.01
RTF1-204ENST00000558117 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.76□□□□□ -1.01
RTF1-204ENST00000558117 DHRS1Q96LJ7 313 aa8.76□□□□□ -1.01
RTF1-204ENST00000558117 SLC6A18Q96N87 628 aa8.76□□□□□ -1.01
RTF1-204ENST00000558117 DUSP15Q9H1R2 295 aaPredicted RBP8.76□□□□□ -1.01
RTF1-204ENST00000558117 MRVI1Q9Y6F6 885 aa8.76□□□□□ -1.01
RTF1-204ENST00000558117 TSPY4P0CV99 314 aa8.75□□□□□ -1.01
RTF1-204ENST00000558117 TSPY10P0CW01 314 aa8.75□□□□□ -1.01
RTF1-204ENST00000558117 ZC3H6P61129 1189 aaKnown RBP8.75□□□□□ -1.01
RTF1-204ENST00000558117 ARID5AQ03989 594 aa8.75□□□□□ -1.01
RTF1-204ENST00000558117 LRRN4CLQ8ND94 238 aa8.75□□□□□ -1.01
RTF1-204ENST00000558117 ANAPC16Q96DE5 110 aa8.75□□□□□ -1.01
RTF1-204ENST00000558117 CCDC120Q96HB5 630 aa8.75□□□□□ -1.01
RTF1-204ENST00000558117 NWD2Q9ULI1 1742 aa8.74□□□□□ -1.01
RTF1-204ENST00000558117 PTPN23Q9H3S7 1636 aa8.74□□□□□ -1.01
RTF1-204ENST00000558117 FGRP09769 529 aa8.74□□□□□ -1.01
RTF1-204ENST00000558117 SRFP11831 508 aa8.74□□□□□ -1.01
RTF1-204ENST00000558117 JUNBP17275 347 aaPredicted RBP8.74□□□□□ -1.01
RTF1-204ENST00000558117 NMIQ13287 307 aaPredicted RBP8.74□□□□□ -1.01
RTF1-204ENST00000558117 MCF2L2Q86YR7 1114 aa8.74□□□□□ -1.01
RTF1-204ENST00000558117 SYTL4Q96C24 671 aaPredicted RBP8.74□□□□□ -1.01
RTF1-204ENST00000558117 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.74□□□□□ -1.013e-12■■□□□ 14.1
RTF1-204ENST00000558117 STRIP2Q9ULQ0 834 aa8.74□□□□□ -1.01
RTF1-204ENST00000558117 THSD7AQ9UPZ6 1657 aa8.74□□□□□ -1.01
RTF1-204ENST00000558117 LTBP3Q9NS15 1303 aa8.74□□□□□ -1.01
RTF1-204ENST00000558117 NALCNQ8IZF0 1738 aa8.74□□□□□ -1.01
RTF1-204ENST00000558117 ADCY9O60503 1353 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 ABCC5O15440 1437 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 A0A1W2PQH9 124 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 SSBP05455 408 aaKnown RBP eCLIP8.73□□□□□ -1.01
RTF1-204ENST00000558117 EGR3Q06889 387 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 TTC6Q86TZ1 520 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 OR6P1Q8NGX9 317 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 ALPK1Q96QP1 1244 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 GMLQ99445 158 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 MTFR1LQ9H019 292 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 SLAMF8Q9P0V8 285 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 NEXMIFQ5QGS0 1516 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 SPATA31A5Q5VU36 1347 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 SPATA31A3Q5VYP0 1347 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 SPATA31A7Q8IWB4 1347 aa8.73□□□□□ -1.01
RTF1-204ENST00000558117 CROCC2H7BZ55 1655 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 PLCH1Q4KWH8 1693 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 FYCO1Q9BQS8 1478 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 C9IYK1 514 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 PAX4O43316 350 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 ESR1P03372 595 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 ETFBP38117 255 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 HTRA3P83110 453 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 PPP2R5EQ16537 467 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 GAB4Q2WGN9 574 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 NBPF9Q3BBW0 867 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 ATG4DQ86TL0 474 aaPredicted RBP8.72□□□□□ -1.01
RTF1-204ENST00000558117 PPFIBP1Q86W92 1011 aa8.72□□□□□ -1.01
RTF1-204ENST00000558117 ENOX1Q8TC92 643 aaKnown RBP8.72□□□□□ -1.01
RTF1-204ENST00000558117 ZNF526Q8TF50 670 aaPredicted RBP8.72□□□□□ -1.01
RTF1-204ENST00000558117 SUCOQ9UBS9 1254 aaKnown RBP8.72□□□□□ -1.01
RTF1-204ENST00000558117 SHISA3A0PJX4 238 aa8.71□□□□□ -1.02
RTF1-204ENST00000558117 SNW1Q13573 536 aaKnown RBP8.71□□□□□ -1.02
RTF1-204ENST00000558117 TDRD10Q5VZ19 366 aaKnown RBP8.71□□□□□ -1.02
RTF1-204ENST00000558117 CCDC144CPQ8IYA2 1237 aa8.71□□□□□ -1.02
RTF1-204ENST00000558117 SMARCC1Q92922 1105 aaPredicted RBP8.71□□□□□ -1.02
RTF1-204ENST00000558117 FAM86C1Q9NVL1 165 aa8.71□□□□□ -1.02
RTF1-204ENST00000558117 FBXL21Q9UKT6 434 aa8.71□□□□□ -1.02
RTF1-204ENST00000558117 PCDHB12Q9Y5F1 795 aa8.71□□□□□ -1.02
RTF1-204ENST00000558117 SLC12A7Q9Y666 1083 aa8.71□□□□□ -1.02
RTF1-204ENST00000558117 METP08581 1390 aa8.71□□□□□ -1.02
RTF1-204ENST00000558117 LMTK2Q8IWU2 1503 aa8.7□□□□□ -1.02
RTF1-204ENST00000558117 YBX3P16989 372 aaKnown RBP eCLIP8.7□□□□□ -1.027e-8■□□□□ 8.2
RTF1-204ENST00000558117 ITGB5P18084 799 aa8.7□□□□□ -1.02
RTF1-204ENST00000558117 PMS1P54277 932 aaKnown RBP8.7□□□□□ -1.02
RTF1-204ENST00000558117 FLAD1Q8NFF5 587 aa8.7□□□□□ -1.02
RTF1-204ENST00000558117 SYTL5Q8TDW5 730 aaPredicted RBP8.7□□□□□ -1.02
RTF1-204ENST00000558117 ASIC4Q96FT7 647 aa8.7□□□□□ -1.02
RTF1-204ENST00000558117 PCDHB10Q9UN67 800 aa8.7□□□□□ -1.02
RTF1-204ENST00000558117 PCDHA11Q9Y5I1 949 aa8.7□□□□□ -1.02
RTF1-204ENST00000558117 ARHGEF5Q12774 1597 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 SSU72P8A0A1W2PR75 194 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 SMAD7O15105 426 aaKnown RBP8.69□□□□□ -1.02
RTF1-204ENST00000558117 TP53P04637 393 aaPredicted RBP8.69□□□□□ -1.02
RTF1-204ENST00000558117 HSPA1AP0DMV8 641 aaKnown RBP8.69□□□□□ -1.02
RTF1-204ENST00000558117 HSPA1BP0DMV9 641 aaKnown RBP8.69□□□□□ -1.02
RTF1-204ENST00000558117 CASP7P55210 303 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 TMC3Q7Z5M5 1100 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 C19orf47Q8N9M1 422 aaKnown RBP8.69□□□□□ -1.02
RTF1-204ENST00000558117 DAGLBQ8NCG7 672 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 HDAC8Q9BY41 377 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 PRDM14Q9GZV8 571 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 ZNF408Q9H9D4 720 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 TMEM59LQ9UK28 342 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 CTNND2Q9UQB3 1225 aa8.69□□□□□ -1.02
RTF1-204ENST00000558117 NRAPQ86VF7 1730 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 337.1 ms