RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 LARGE1O95461 756 aa16.56■□□□□ 0.24
USP3-205ENST00000557884 SOX10P56693 466 aa16.56■□□□□ 0.24
USP3-205ENST00000557884 TRAF1Q13077 416 aa16.56■□□□□ 0.24
USP3-205ENST00000557884 PRAMEF19Q5SWL8 479 aa16.56■□□□□ 0.24
USP3-205ENST00000557884 NECAB1Q8N987 351 aa16.56■□□□□ 0.24
USP3-205ENST00000557884 SLC26A6Q9BXS9 759 aa16.56■□□□□ 0.24
USP3-205ENST00000557884 RNF208Q9H0X6 261 aa16.56■□□□□ 0.24
USP3-205ENST00000557884 SLKQ9H2G2 1235 aaPredicted RBP16.56■□□□□ 0.24
USP3-205ENST00000557884 CPLX1O14810 134 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 PFKFB2O60825 505 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 IGHA2P01877 340 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 CCND3P30281 292 aaPredicted RBP16.55■□□□□ 0.24
USP3-205ENST00000557884 HOXA13P31271 388 aaPredicted RBP16.55■□□□□ 0.24
USP3-205ENST00000557884 SCRN1Q12765 414 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 RABEP1Q15276 862 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 NTRK3Q16288 839 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 ME3Q16798 604 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 MAP3K21Q5TCX8 1036 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 WWC2Q6AWC2 1192 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 RGS22Q8NE09 1264 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 TRPV1Q8NER1 839 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 SYTL5Q8TDW5 730 aaPredicted RBP16.55■□□□□ 0.24
USP3-205ENST00000557884 COL20A1Q9P218 1284 aa16.55■□□□□ 0.24
USP3-205ENST00000557884 BAZ2BQ9UIF8 2168 aaKnown RBP16.54■□□□□ 0.24
USP3-205ENST00000557884 IFNAR1P17181 557 aa16.54■□□□□ 0.24
USP3-205ENST00000557884 CNGA1P29973 690 aa16.54■□□□□ 0.24
USP3-205ENST00000557884 AKAP17AQ02040 695 aaKnown RBP16.54■□□□□ 0.24
USP3-205ENST00000557884 ZNF467Q7Z7K2 595 aaPredicted RBP16.54■□□□□ 0.24
USP3-205ENST00000557884 TMEM106CQ9BVX2 250 aa16.54■□□□□ 0.24
USP3-205ENST00000557884 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.54■□□□□ 0.241e-6■■■■■ 28.5
USP3-205ENST00000557884 HMX1Q9NP08 348 aaPredicted RBP16.54■□□□□ 0.24
USP3-205ENST00000557884 RPTORQ8N122 1335 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 POTEFA5A3E0 1075 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 GCOM1H8Y6P7 765 aaPredicted RBP16.53■□□□□ 0.24
USP3-205ENST00000557884 SNAI1O95863 264 aaPredicted RBP16.53■□□□□ 0.24
USP3-205ENST00000557884 POLR2MP0CAP2 368 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 CYBAP13498 195 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 ALDH5A1P51649 535 aaPredicted RBP16.53■□□□□ 0.24
USP3-205ENST00000557884 HSD17B4P51659 736 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 NAPAP54920 295 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 TYW1BQ6NUM6 668 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 CPLX2Q6PUV4 134 aaKnown RBP16.53■□□□□ 0.24
USP3-205ENST00000557884 MAMDC4Q6UXC1 1216 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 ARMCX2Q7L311 632 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 DEFB118Q96PH6 123 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 TAAR1Q96RJ0 339 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.53■□□□□ 0.24
USP3-205ENST00000557884 ADD3Q9UEY8 706 aaKnown RBP16.53■□□□□ 0.24
USP3-205ENST00000557884 ZHX1Q9UKY1 873 aaPredicted RBP16.53■□□□□ 0.24
USP3-205ENST00000557884 CNPY2Q9Y2B0 182 aa16.53■□□□□ 0.24
USP3-205ENST00000557884 SYNGAP1Q96PV0 1343 aa16.52■□□□□ 0.24
USP3-205ENST00000557884 ASB14A6NK59 587 aa16.52■□□□□ 0.24
USP3-205ENST00000557884 STXBP3O00186 592 aa16.52■□□□□ 0.24
USP3-205ENST00000557884 PRPF3O43395 683 aaKnown RBP16.52■□□□□ 0.24
USP3-205ENST00000557884 SCG2P13521 617 aa16.52■□□□□ 0.24
USP3-205ENST00000557884 SSRP1Q08945 709 aaKnown RBP16.52■□□□□ 0.24
USP3-205ENST00000557884 PFKFB3Q16875 520 aaPredicted RBP16.52■□□□□ 0.24
USP3-205ENST00000557884 ANO1Q5XXA6 986 aa16.52■□□□□ 0.24
USP3-205ENST00000557884 FCHSD1Q86WN1 690 aa16.52■□□□□ 0.24
USP3-205ENST00000557884 MSL3Q8N5Y2 521 aaKnown RBP16.52■□□□□ 0.24
USP3-205ENST00000557884 RNF26Q9BY78 433 aaPredicted RBP16.52■□□□□ 0.24
USP3-205ENST00000557884 LIMCH1Q9UPQ0 1083 aa16.52■□□□□ 0.24
USP3-205ENST00000557884 SMCHD1A6NHR9 2005 aa16.52■□□□□ 0.23
USP3-205ENST00000557884 EIF2AK2P19525 551 aaKnown RBP16.51■□□□□ 0.23
USP3-205ENST00000557884 PKN1Q16512 942 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 UBE2SQ16763 222 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 USP17L6PQ6QN14 398 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 EEPD1Q7L9B9 569 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 TRIM22Q8IYM9 498 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 CUL5Q93034 780 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 GTF3C6Q969F1 213 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 RMDN3Q96TC7 470 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 PSTPIP2Q9H939 334 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 PAK6Q9NQU5 681 aaPredicted RBP16.51■□□□□ 0.23
USP3-205ENST00000557884 BARHL2Q9NY43 387 aa16.51■□□□□ 0.23
USP3-205ENST00000557884 RBM27Q9P2N5 1060 aaKnown RBP16.51■□□□□ 0.23
USP3-205ENST00000557884 ST18O60284 1047 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 CDKL5O76039 1030 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 CTDNEP1O95476 244 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 GJB1P08034 283 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 ZNF865P0CJ78 1059 aaPredicted RBP16.5■□□□□ 0.23
USP3-205ENST00000557884 EN2P19622 333 aaPredicted RBP16.5■□□□□ 0.23
USP3-205ENST00000557884 GHRHRQ02643 423 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 PDE4DQ08499 809 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 ACVR2BQ13705 512 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 ARHGEF16Q5VV41 709 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 FBXO16Q8IX29 292 aaPredicted RBP16.5■□□□□ 0.23
USP3-205ENST00000557884 DNERQ8NFT8 737 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 SMARCC2Q8TAQ2 1214 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 MAF1Q9H063 256 aa16.5■□□□□ 0.23
USP3-205ENST00000557884 MEIS2O14770 477 aa16.49■□□□□ 0.23
USP3-205ENST00000557884 CD2BP2O95400 341 aaKnown RBP16.49■□□□□ 0.23
USP3-205ENST00000557884 ST3GAL1Q11201 340 aa16.49■□□□□ 0.23
USP3-205ENST00000557884 PPP1R18Q6NYC8 613 aa16.49■□□□□ 0.23
USP3-205ENST00000557884 CCDC83Q8IWF9 413 aa16.49■□□□□ 0.23
USP3-205ENST00000557884 NSUN6Q8TEA1 469 aaKnown RBP16.49■□□□□ 0.23
USP3-205ENST00000557884 U2AF1L4Q8WU68 220 aaKnown RBP16.49■□□□□ 0.23
USP3-205ENST00000557884 LENG1Q96BZ8 264 aaPredicted RBP16.49■□□□□ 0.23
USP3-205ENST00000557884 AIFM3Q96NN9 605 aa16.49■□□□□ 0.23
USP3-205ENST00000557884 PXMP2Q9NR77 195 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms