RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ALDH8A1Q9H2A2 487 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-230ENST00000557427 SH2D4AQ9H788 454 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 LMCD1Q9NZU5 365 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 DDX49Q9Y6V7 483 aaKnown RBP14.78□□□□□ -0.04
SHMT2-230ENST00000557427 PTPRSQ13332 1948 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 GRXCR2A6NFK2 248 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 RBAK-RBAKDNI3L0D1 243 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 SLC4A3P48751 1232 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 RBM25P49756 843 aaKnown RBP14.77□□□□□ -0.05
SHMT2-230ENST00000557427 CNTN2Q02246 1040 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 PTCRAQ6ISU1 281 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-230ENST00000557427 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.77□□□□□ -0.05
SHMT2-230ENST00000557427 TMCO2Q7Z6W1 182 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-230ENST00000557427 TLK2Q86UE8 772 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 AMOTL1Q8IY63 956 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 STK11IPQ8N1F8 1099 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 FSD1Q9BTV5 496 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 SUGCTQ9HAC7 445 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 TET1Q8NFU7 2136 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 TRIOO75962 3097 aa14.77□□□□□ -0.05
SHMT2-230ENST00000557427 CACNA1AO00555 2505 aa14.76□□□□□ -0.05
SHMT2-230ENST00000557427 DYNC1LI2O43237 492 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-230ENST00000557427 APPP05067 770 aa14.76□□□□□ -0.05
SHMT2-230ENST00000557427 ZFYP08048 801 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-230ENST00000557427 SMPD1P17405 629 aa14.76□□□□□ -0.05
SHMT2-230ENST00000557427 C12orf60Q5U649 245 aa14.76□□□□□ -0.05
SHMT2-230ENST00000557427 CTR9Q6PD62 1173 aa14.76□□□□□ -0.05
SHMT2-230ENST00000557427 NOL8Q76FK4 1167 aaKnown RBP14.76□□□□□ -0.05
SHMT2-230ENST00000557427 APPBP2Q92624 585 aa14.76□□□□□ -0.05
SHMT2-230ENST00000557427 SEC62Q99442 399 aaKnown RBP14.76□□□□□ -0.05
SHMT2-230ENST00000557427 SEZ6LQ9BYH1 1024 aa14.76□□□□□ -0.05
SHMT2-230ENST00000557427 SWAP70Q9UH65 585 aa14.76□□□□□ -0.05
SHMT2-230ENST00000557427 MINDY4BA8MYZ0 360 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 M0R2C6 588 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 ATP2A1O14983 1001 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 ST18O60284 1047 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 ACTN1P12814 892 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 CDK8P49336 464 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 PDE1AP54750 535 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 LRRFIP1Q32MZ4 808 aaKnown RBP14.75□□□□□ -0.05
SHMT2-230ENST00000557427 CPXCR1Q8N123 301 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 PRSS33Q8NF86 280 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 SLF1Q9BQI6 1058 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 PDGFCQ9NRA1 345 aa14.75□□□□□ -0.05
SHMT2-230ENST00000557427 TNKSO95271 1327 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 GSG1L2A8MUP6 293 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 KIF28PB7ZC32 967 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 GPAA1O43292 621 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 RAD21O60216 631 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 IQCF3P0C7M6 154 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 ANKRD35Q8N283 1001 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 NEK9Q8TD19 979 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 CCDC17Q96LX7 622 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.74□□□□□ -0.055e-8■■■□□ 18.8
SHMT2-230ENST00000557427 RAVER2Q9HCJ3 691 aaKnown RBP14.74□□□□□ -0.05
SHMT2-230ENST00000557427 MYH8P13535 1937 aa14.74□□□□□ -0.05
SHMT2-230ENST00000557427 ZNF536O15090 1300 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 SOWAHBA6NEL2 793 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 IER5LQ5T953 404 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 TAPT1Q6NXT6 567 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 FAM133AQ8N9E0 248 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 PPP1R13LQ8WUF5 828 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 AP5M1Q9H0R1 490 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 KANSL2Q9H9L4 492 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 GOPCQ9HD26 462 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 MTUS1Q9ULD2 1270 aa14.73□□□□□ -0.05
SHMT2-230ENST00000557427 C19orf67A6NJJ6 358 aa14.72□□□□□ -0.05
SHMT2-230ENST00000557427 PATL2C9JE40 543 aaKnown RBP14.72□□□□□ -0.05
SHMT2-230ENST00000557427 H3BQ06 376 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-230ENST00000557427 SUPT20HL2P0C7V6 817 aa14.72□□□□□ -0.05
SHMT2-230ENST00000557427 SDSP20132 328 aa14.72□□□□□ -0.05
SHMT2-230ENST00000557427 RFC2P35250 354 aa14.72□□□□□ -0.05
SHMT2-230ENST00000557427 TDO2P48775 406 aa14.72□□□□□ -0.05
SHMT2-230ENST00000557427 ZP2Q05996 745 aa14.72□□□□□ -0.05
SHMT2-230ENST00000557427 GPNMBQ14956 572 aa14.72□□□□□ -0.05
SHMT2-230ENST00000557427 CASC1Q6TDU7 716 aa14.72□□□□□ -0.05
SHMT2-230ENST00000557427 C16orf86Q6ZW13 317 aa14.72□□□□□ -0.05
SHMT2-230ENST00000557427 FTOQ9C0B1 505 aaKnown RBP eCLIP14.72□□□□□ -0.05
SHMT2-230ENST00000557427 TRIM6-TRIM34B2RNG4 842 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 ZEB2O60315 1214 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 GNAT2P19087 354 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 ERVK-21P61565 698 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 DEFB103AP81534 67 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 ZMYM1Q5SVZ6 1142 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 IFNL3Q8IZI9 196 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 PRPF38AQ8NAV1 312 aaKnown RBP14.71□□□□□ -0.05
SHMT2-230ENST00000557427 EVI5LQ96CN4 794 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 MKNK2Q9HBH9 465 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 SLC38A10Q9HBR0 1119 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 ARPP21Q9UBL0 812 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-230ENST00000557427 Q9Y3F1 56 aa14.71□□□□□ -0.05
SHMT2-230ENST00000557427 ZDBF2Q9HCK1 2354 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 TECTAO75443 2155 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 C5orf42Q9H799 3197 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 F5H6K3 240 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 NDUFB10O96000 172 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 WDR5P61964 334 aaKnown RBP14.7□□□□□ -0.06
SHMT2-230ENST00000557427 PURAQ00577 322 aaKnown RBP14.7□□□□□ -0.06
SHMT2-230ENST00000557427 KLRC3Q07444 240 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 TCTN1Q2MV58 587 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms