RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 RRP1P56182 461 aaKnown RBP21.58■■□□□ 1.05
VIPAS39-209ENST00000556909 KIAA1211Q6ZU35 1233 aa21.58■■□□□ 1.05
VIPAS39-209ENST00000556909 TANC1Q9C0D5 1861 aa21.58■■□□□ 1.04
VIPAS39-209ENST00000556909 ZMYM6O95789 1325 aa21.57■■□□□ 1.04
VIPAS39-209ENST00000556909 CCL23P55773 120 aa21.57■■□□□ 1.04
VIPAS39-209ENST00000556909 DUSP28Q4G0W2 176 aa21.57■■□□□ 1.04
VIPAS39-209ENST00000556909 WNT8AQ9H1J5 351 aa21.57■■□□□ 1.04
VIPAS39-209ENST00000556909 MTIF3Q9H2K0 278 aaKnown RBP21.57■■□□□ 1.04
VIPAS39-209ENST00000556909 GPCPD1Q9NPB8 672 aa21.57■■□□□ 1.04
VIPAS39-209ENST00000556909 ADD3Q9UEY8 706 aaKnown RBP21.57■■□□□ 1.04
VIPAS39-209ENST00000556909 LOC102724159A0A0B4J2E5 919 aa21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 HSPD1P10809 573 aaKnown RBP21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 PDHBP11177 359 aa21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 PWP2Q15269 919 aaKnown RBP21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 RAB30Q15771 203 aa21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 MCMDC2Q4G0Z9 681 aa21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 SLC30A10Q6XR72 485 aa21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 ZNF589Q86UQ0 364 aaPredicted RBP21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 GAS2L1Q99501 681 aaPredicted RBP21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 TCP11L1Q9NUJ3 509 aa21.56■■□□□ 1.04
VIPAS39-209ENST00000556909 MYH6P13533 1939 aa21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 PTPDC1A2A3K4 754 aa21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 FGBP02675 491 aa21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 OTOP2Q7RTS6 562 aa21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 CLEC4DQ8WXI8 215 aa21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 SYMPKQ92797 1274 aaKnown RBP21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 CRBNQ96SW2 442 aa21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 WDR11Q9BZH6 1224 aa21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 ALDH8A1Q9H2A2 487 aaPredicted RBP21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 PRDM12Q9H4Q4 367 aa21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 MSRAQ9UJ68 235 aa21.55■■□□□ 1.04
VIPAS39-209ENST00000556909 HAND2P61296 217 aa21.54■■□□□ 1.04
VIPAS39-209ENST00000556909 NMIQ13287 307 aaPredicted RBP21.54■■□□□ 1.04
VIPAS39-209ENST00000556909 HDAC1Q13547 482 aaPredicted RBP21.54■■□□□ 1.04
VIPAS39-209ENST00000556909 RBM47A0AV96 593 aaKnown RBP21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 CALML3P27482 149 aa21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 ZNF543Q08ER8 600 aa21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 TJAP1Q5JTD0 557 aa21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 TICAM2Q86XR7 235 aa21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 VWCEQ96DN2 955 aa21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 NKX2-4Q9H2Z4 354 aa21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 PRDM6Q9NQX0 595 aa21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 POLR3EQ9NVU0 708 aa21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 YBX2Q9Y2T7 364 aaKnown RBP21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 CCDC171Q6TFL3 1326 aa21.53■■□□□ 1.04
VIPAS39-209ENST00000556909 SNHG28P0DPA3 235 aa21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 CPT1AP50416 773 aa21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 PURAQ00577 322 aaKnown RBP21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 ADGRE1Q14246 886 aa21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 AKNAD1Q5T1N1 836 aa21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 RNF207Q6ZRF8 634 aa21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 TBC1D10CQ8IV04 446 aa21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 OR6J1Q8NGC5 347 aa21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 SCLYQ96I15 445 aa21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 TRMT13Q9NUP7 481 aaKnown RBP21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 PNMA2Q9UL42 364 aa21.52■■□□□ 1.04
VIPAS39-209ENST00000556909 WDR19Q8NEZ3 1342 aa21.52■■□□□ 1.03
VIPAS39-209ENST00000556909 REV3LO60673 3130 aa21.51■■□□□ 1.03
VIPAS39-209ENST00000556909 KIAA1217Q5T5P2 1943 aa21.51■■□□□ 1.03
VIPAS39-209ENST00000556909 MYL3P08590 195 aa21.51■■□□□ 1.03
VIPAS39-209ENST00000556909 PCP11498 1178 aaKnown RBP21.51■■□□□ 1.03
VIPAS39-209ENST00000556909 RPS6P62753 249 aaKnown RBP21.51■■□□□ 1.03
VIPAS39-209ENST00000556909 PPM1EQ8WY54 764 aa21.51■■□□□ 1.03
VIPAS39-209ENST00000556909 TNKSO95271 1327 aa21.51■■□□□ 1.03
VIPAS39-209ENST00000556909 TRANK1O15050 2925 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 CYP2C9P11712 490 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 EDNRBP24530 442 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 PDE4DQ08499 809 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 PPP2R5BQ15173 497 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 MFSD6Q6ZSS7 791 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 RPUSD2Q8IZ73 545 aaKnown RBP21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 TTC14Q96N46 770 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 MTG1Q9BT17 334 aaPredicted RBP21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 SLC28A3Q9HAS3 691 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 SLC4A7Q9Y6M7 1214 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 NEDD4P46934 1319 aa21.5■■□□□ 1.03
VIPAS39-209ENST00000556909 TRIP12Q14669 1992 aaPredicted RBP21.49■■□□□ 1.03
VIPAS39-209ENST00000556909 SUPT20HL2P0C7V6 817 aa21.49■■□□□ 1.03
VIPAS39-209ENST00000556909 RABGGTBP53611 331 aa21.49■■□□□ 1.03
VIPAS39-209ENST00000556909 MPHOSPH6Q99547 160 aaKnown RBP21.49■■□□□ 1.03
VIPAS39-209ENST00000556909 LNPKQ9C0E8 428 aa21.49■■□□□ 1.03
VIPAS39-209ENST00000556909 TRIM6-TRIM34B2RNG4 842 aa21.48■■□□□ 1.03
VIPAS39-209ENST00000556909 NKRFO15226 690 aaKnown RBP eCLIP21.48■■□□□ 1.03
VIPAS39-209ENST00000556909 PFKMP08237 780 aa21.48■■□□□ 1.03
VIPAS39-209ENST00000556909 DNERQ8NFT8 737 aa21.48■■□□□ 1.03
VIPAS39-209ENST00000556909 TET1Q8NFU7 2136 aa21.48■■□□□ 1.03
VIPAS39-209ENST00000556909 SCFD2Q8WU76 684 aa21.48■■□□□ 1.03
VIPAS39-209ENST00000556909 GPHNQ9NQX3 736 aaPredicted RBP21.48■■□□□ 1.03
VIPAS39-209ENST00000556909 RAD50Q92878 1312 aa21.48■■□□□ 1.03
VIPAS39-209ENST00000556909 PTPRSQ13332 1948 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 NCOR1O75376 2440 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 ZBBXA8MT70 800 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 MYOGP15173 224 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 IGFBP4P22692 258 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 NBPF20Q3BBV1 942 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 USH1GQ495M9 461 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 BRDTQ58F21 947 aaPredicted RBP21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 GPATCH4Q5T3I0 446 aaKnown RBP21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 PPP2R2DQ66LE6 453 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 ESR2Q92731 530 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms