RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 DBR1Q9UK59 544 aaKnown RBP8.28□□□□□ -1.08
PRPF39-209ENST00000556353 EMC9Q9Y3B6 208 aa8.28□□□□□ -1.08
PRPF39-209ENST00000556353 NPHP3-ACAD11A0A0J9YXS1 232 aa8.27□□□□□ -1.09
PRPF39-209ENST00000556353 F8W031 263 aaPredicted RBP8.27□□□□□ -1.09
PRPF39-209ENST00000556353 BUB1BO60566 1050 aaPredicted RBP8.27□□□□□ -1.09
PRPF39-209ENST00000556353 INHBBP09529 407 aa8.27□□□□□ -1.09
PRPF39-209ENST00000556353 PFKLP17858 780 aa8.27□□□□□ -1.09
PRPF39-209ENST00000556353 AFF3P51826 1226 aaKnown RBP8.27□□□□□ -1.09
PRPF39-209ENST00000556353 RBM10P98175 930 aaKnown RBP8.27□□□□□ -1.09
PRPF39-209ENST00000556353 LCE4AQ5TA78 99 aa8.27□□□□□ -1.09
PRPF39-209ENST00000556353 TTLL10Q6ZVT0 673 aa8.27□□□□□ -1.09
PRPF39-209ENST00000556353 CPNE8Q86YQ8 564 aa8.27□□□□□ -1.09
PRPF39-209ENST00000556353 TMEFF1Q8IYR6 380 aa8.27□□□□□ -1.09
PRPF39-209ENST00000556353 LZTR1Q8N653 840 aa8.27□□□□□ -1.09
PRPF39-209ENST00000556353 PPP1R14AQ96A00 147 aa8.27□□□□□ -1.09
PRPF39-209ENST00000556353 DACT3Q96B18 629 aaPredicted RBP8.27□□□□□ -1.09
PRPF39-209ENST00000556353 BMP7P18075 431 aa8.26□□□□□ -1.09
PRPF39-209ENST00000556353 TARBP2Q15633 366 aaKnown RBP8.26□□□□□ -1.09
PRPF39-209ENST00000556353 FAM129CQ86XR2 697 aa8.26□□□□□ -1.09
PRPF39-209ENST00000556353 EPB41L4AQ9HCS5 686 aaPredicted RBP8.26□□□□□ -1.09
PRPF39-209ENST00000556353 RAPGEFL1Q9UHV5 662 aa8.26□□□□□ -1.09
PRPF39-209ENST00000556353 RWDD3Q9Y3V2 267 aa8.26□□□□□ -1.09
PRPF39-209ENST00000556353 IRS2Q9Y4H2 1338 aa8.26□□□□□ -1.09
PRPF39-209ENST00000556353 ADAMTS20P59510 1910 aa8.25□□□□□ -1.09
PRPF39-209ENST00000556353 ZC3H12DA2A288 527 aaKnown RBP8.25□□□□□ -1.09
PRPF39-209ENST00000556353 GLI4P10075 376 aa8.25□□□□□ -1.09
PRPF39-209ENST00000556353 PRR5P85299 388 aa8.25□□□□□ -1.09
PRPF39-209ENST00000556353 SCRN1Q12765 414 aa8.25□□□□□ -1.09
PRPF39-209ENST00000556353 LARP1BQ659C4 914 aaKnown RBP8.25□□□□□ -1.09
PRPF39-209ENST00000556353 C6orf15Q6UXA7 325 aaPredicted RBP8.25□□□□□ -1.09
PRPF39-209ENST00000556353 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.25□□□□□ -1.093e-8■■■■□ 20.1
PRPF39-209ENST00000556353 PRKAG3Q9UGI9 489 aa8.25□□□□□ -1.09
PRPF39-209ENST00000556353 HCFC2Q9Y5Z7 792 aa8.25□□□□□ -1.09
PRPF39-209ENST00000556353 NPHS1O60500 1241 aa8.24□□□□□ -1.09
PRPF39-209ENST00000556353 TRIM59Q8IWR1 403 aa8.24□□□□□ -1.09
PRPF39-209ENST00000556353 COPS5Q92905 334 aa8.24□□□□□ -1.09
PRPF39-209ENST00000556353 ZNF428Q96B54 188 aa8.24□□□□□ -1.09
PRPF39-209ENST00000556353 ZCCHC4Q9H5U6 513 aa8.24□□□□□ -1.09
PRPF39-209ENST00000556353 CLEC1BQ9P126 229 aa8.24□□□□□ -1.09
PRPF39-209ENST00000556353 GTF2IRD2BQ6EKJ0 949 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 GTF2IRD2Q86UP8 949 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 FAM178BQ8IXR5 827 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 USP33Q8TEY7 942 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 PWWP2AQ96N64 755 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 PARD6AQ9NPB6 346 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 GPRC5CQ9NQ84 441 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 CYP26B1Q9NR63 512 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 GULP1Q9UBP9 304 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 NUDT5Q9UKK9 219 aa8.23□□□□□ -1.09
PRPF39-209ENST00000556353 DDAH1O94760 285 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 PLS3P13797 630 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 IGFBP6P24592 240 aaPredicted RBP8.22□□□□□ -1.09
PRPF39-209ENST00000556353 ETFBP38117 255 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 ARID5AQ03989 594 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 FXNQ16595 210 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 LILRA6Q6PI73 481 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 NETO2Q8NC67 525 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 PEX11GQ96HA9 241 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 MRGPRX3Q96LB0 322 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 MMP19Q99542 508 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 MTA3Q9BTC8 594 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 RNF38Q9H0F5 515 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 NKX2-4Q9H2Z4 354 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.22□□□□□ -1.09
PRPF39-209ENST00000556353 LRP2BPQ9P2M1 347 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 FBLN5Q9UBX5 448 aa8.22□□□□□ -1.09
PRPF39-209ENST00000556353 C7orf72A4D263 438 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 TRIM13O60858 407 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 PPP1R11O60927 126 aaPredicted RBP8.21□□□□□ -1.1
PRPF39-209ENST00000556353 THBDP07204 575 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 FGRP09769 529 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 FBLN1P23142 703 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 SV2CQ496J9 727 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 NLGN1Q8N2Q7 840 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 MARCH10Q8NA82 808 aaPredicted RBP8.21□□□□□ -1.1
PRPF39-209ENST00000556353 ALG3Q92685 438 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 TINF2Q9BSI4 451 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 LGR4Q9BXB1 951 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 RXFP1Q9HBX9 757 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 FAN1Q9Y2M0 1017 aa8.21□□□□□ -1.1
PRPF39-209ENST00000556353 B2RBV5 119 aa8.2□□□□□ -1.1
PRPF39-209ENST00000556353 NCAM1P13591 858 aa8.2□□□□□ -1.1
PRPF39-209ENST00000556353 HOXA5P20719 270 aa8.2□□□□□ -1.1
PRPF39-209ENST00000556353 LIMS1P48059 325 aa8.2□□□□□ -1.1
PRPF39-209ENST00000556353 RBM25P49756 843 aaKnown RBP8.2□□□□□ -1.1
PRPF39-209ENST00000556353 WWC2Q6AWC2 1192 aa8.2□□□□□ -1.1
PRPF39-209ENST00000556353 TSPAN17Q96FV3 270 aa8.2□□□□□ -1.1
PRPF39-209ENST00000556353 KCNC2Q96PR1 638 aa8.2□□□□□ -1.1
PRPF39-209ENST00000556353 PLA2G2DQ9UNK4 145 aa8.2□□□□□ -1.1
PRPF39-209ENST00000556353 SUSD5O60279 629 aa8.19□□□□□ -1.1
PRPF39-209ENST00000556353 SASH1O94885 1247 aa8.19□□□□□ -1.1
PRPF39-209ENST00000556353 FUCA1P04066 466 aa8.19□□□□□ -1.1
PRPF39-209ENST00000556353 SLC9A5Q14940 896 aa8.19□□□□□ -1.1
PRPF39-209ENST00000556353 VMACQ2NL98 169 aa8.19□□□□□ -1.1
PRPF39-209ENST00000556353 ZNF227Q86WZ6 799 aa8.19□□□□□ -1.1
PRPF39-209ENST00000556353 BTN2A2Q8WVV5 523 aa8.19□□□□□ -1.1
PRPF39-209ENST00000556353 ZNF408Q9H9D4 720 aa8.19□□□□□ -1.1
PRPF39-209ENST00000556353 ITGAVP06756 1048 aa8.18□□□□□ -1.1
PRPF39-209ENST00000556353 ASGR2P07307 311 aa8.18□□□□□ -1.1
PRPF39-209ENST00000556353 DNAJA1P31689 397 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms