RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 APPBP2Q92624 585 aa13.43□□□□□ -0.26
VPS33B-204ENST00000554660 SCLYQ96I15 445 aa13.43□□□□□ -0.26
VPS33B-204ENST00000554660 NOC4LQ9BVI4 516 aaKnown RBP13.43□□□□□ -0.26
VPS33B-204ENST00000554660 LRRCC1Q9C099 1032 aa13.43□□□□□ -0.26
VPS33B-204ENST00000554660 PDGFCQ9NRA1 345 aa13.43□□□□□ -0.26
VPS33B-204ENST00000554660 ZNF536O15090 1300 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 ZBBXA8MT70 800 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 GOLGA6L22H0YM25 854 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 DYNC1LI2O43237 492 aaPredicted RBP13.42□□□□□ -0.26
VPS33B-204ENST00000554660 STAT2P52630 851 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 SNAP25P60880 206 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 NUCB2P80303 420 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 TFF2Q03403 129 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 KBTBD3Q8NAB2 608 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 MKL1Q969V6 931 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 USP26Q9BXU7 913 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 AP5M1Q9H0R1 490 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 ECHDC1Q9NTX5 307 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 LCTP09848 1927 aa13.42□□□□□ -0.26
VPS33B-204ENST00000554660 CABYRO75952 493 aa13.41□□□□□ -0.26
VPS33B-204ENST00000554660 APPP05067 770 aa13.41□□□□□ -0.26
VPS33B-204ENST00000554660 TSPY3P0CV98 308 aa13.41□□□□□ -0.26
VPS33B-204ENST00000554660 TSPY8P0CW00 308 aa13.41□□□□□ -0.26
VPS33B-204ENST00000554660 ALAS1P13196 640 aa13.41□□□□□ -0.26
VPS33B-204ENST00000554660 MUM1L1Q5H9M0 696 aa13.41□□□□□ -0.26
VPS33B-204ENST00000554660 TNPO1Q92973 898 aaKnown RBP13.41□□□□□ -0.26
VPS33B-204ENST00000554660 VWCEQ96DN2 955 aa13.41□□□□□ -0.26
VPS33B-204ENST00000554660 PURBQ96QR8 312 aaKnown RBP13.41□□□□□ -0.26
VPS33B-204ENST00000554660 SYNPO2Q9UMS6 1093 aa13.41□□□□□ -0.26
VPS33B-204ENST00000554660 SLC4A7Q9Y6M7 1214 aa13.41□□□□□ -0.26
VPS33B-204ENST00000554660 ASB14A6NK59 587 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 ATP2A2P16615 1042 aaKnown RBP13.4□□□□□ -0.26
VPS33B-204ENST00000554660 PLA2G5P39877 138 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 SLC1A4P43007 532 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 MCM2P49736 904 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 KCNQ1P51787 676 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 TTLL4Q14679 1199 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 SKIV2LQ15477 1246 aaKnown RBP13.4□□□□□ -0.26
VPS33B-204ENST00000554660 TAPT1Q6NXT6 567 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 TRERF1Q96PN7 1200 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 CERS4Q9HA82 394 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 ZNF287Q9HBT7 754 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 TRMT13Q9NUP7 481 aaKnown RBP13.4□□□□□ -0.26
VPS33B-204ENST00000554660 PCDHA11Q9Y5I1 949 aa13.4□□□□□ -0.26
VPS33B-204ENST00000554660 SALL3Q9BXA9 1300 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 RFXAPO00287 272 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 RNF113AO15541 343 aaKnown RBP13.39□□□□□ -0.27
VPS33B-204ENST00000554660 ST18O60284 1047 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 ZEB2O60315 1214 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 CA3P07451 260 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 CYP2C9P11712 490 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 MCCP23508 829 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 TFAP4Q01664 338 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 NSMFQ6X4W1 530 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 KCTD1Q719H9 257 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 DEFB128Q7Z7B8 93 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 FAM160B2Q86V87 743 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 IFNL3Q8IZI9 196 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 NEDD1Q8NHV4 660 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 GMCL1Q96IK5 515 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 SEC62Q99442 399 aaKnown RBP13.39□□□□□ -0.27
VPS33B-204ENST00000554660 ALDH8A1Q9H2A2 487 aaPredicted RBP13.39□□□□□ -0.27
VPS33B-204ENST00000554660 TSPYL2Q9H2G4 693 aaPredicted RBP13.39□□□□□ -0.27
VPS33B-204ENST00000554660 CYP39A1Q9NYL5 469 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 MTMR7Q9Y216 660 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 BDP1A6H8Y1 2624 aa13.39□□□□□ -0.27
VPS33B-204ENST00000554660 TRANK1O15050 2925 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 EPOPA6NHQ4 379 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 HSP90AA1P07900 732 aaKnown RBP13.38□□□□□ -0.27
VPS33B-204ENST00000554660 FDX1P10109 184 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 BMP1P13497 986 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 GNAT2P19087 354 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 ANAPC15P60006 121 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 TKFCQ3LXA3 575 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 PPP1R13LQ8WUF5 828 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 STAG1Q8WVM7 1258 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 PRR12Q9ULL5 1215 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 STX8Q9UNK0 236 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 TCF20Q9UGU0 1960 aaKnown RBP13.38□□□□□ -0.27
VPS33B-204ENST00000554660 TANC1Q9C0D5 1861 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 TNKSO95271 1327 aa13.38□□□□□ -0.27
VPS33B-204ENST00000554660 COL4A4P53420 1690 aaPredicted RBP13.37□□□□□ -0.27
VPS33B-204ENST00000554660 SCN5AQ14524 2016 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 MYO9BQ13459 2157 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 ERC2O15083 957 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 NMT2O60551 498 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 ARHGEF15O94989 841 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 ZFYP08048 801 aaPredicted RBP13.37□□□□□ -0.27
VPS33B-204ENST00000554660 XRCC6P12956 609 aaKnown RBP eCLIP13.37□□□□□ -0.27
VPS33B-204ENST00000554660 SDSP20132 328 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 PDE4BQ07343 736 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 PPARAQ07869 468 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 KRT40Q6A162 431 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 IQSEC1Q6DN90 963 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 KIAA1211Q6ZU35 1233 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 RPUSD2Q8IZ73 545 aaKnown RBP13.37□□□□□ -0.27
VPS33B-204ENST00000554660 CHURC1Q8WUH1 139 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 FAM122AQ96E09 287 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 NAPBQ9H115 298 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 VTA1Q9NP79 307 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms