RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ABCB11O95342 1321 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 ASB14A6NK59 587 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 DNM1LO00429 736 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 ZBTB5O15062 677 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 EVI5O60447 810 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 DDAH1O94760 285 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 ADCYAP1R1P41586 468 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 LIFRP42702 1097 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 TAPT1Q6NXT6 567 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 CCDC82Q8N4S0 544 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 SYTL5Q8TDW5 730 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 TAAR1Q96RJ0 339 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 MTA3Q9BTC8 594 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 AMNQ9BXJ7 453 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 PCDHA1Q9Y5I3 950 aa13.46□□□□□ -0.25
CCDC88C-208ENST00000554165 TRIOBPQ9H2D6 2365 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 SYNRGQ9UMZ2 1314 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 ADAMTS4O75173 837 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 REC8O95072 547 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 CFBP00751 764 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 CAPN2P17655 700 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 HOXA13P31271 388 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 APOA5Q6Q788 366 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 MICU3Q86XE3 530 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 TMTC2Q8N394 836 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 ARRDC4Q8NCT1 418 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 CTCFLQ8NI51 663 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 MORC4Q8TE76 937 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 USP26Q9BXU7 913 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 PNMA2Q9UL42 364 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 ZMYND8Q9ULU4 1186 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 MRPL11Q9Y3B7 192 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 SLC12A7Q9Y666 1083 aa13.45□□□□□ -0.26
CCDC88C-208ENST00000554165 PNMA6FA0A0J9YX94 578 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 KBTBD13C9JR72 458 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 CTAGE5O15320 804 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 SMPD1P17405 629 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 SYN1P17600 705 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 BEX3Q00994 111 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 TNFAIP2Q03169 654 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 KRT32Q14532 448 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 NOL8Q76FK4 1167 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 SGMS1Q86VZ5 419 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 FANCBQ8NB91 859 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 RGS22Q8NE09 1264 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 MAP3K14Q99558 947 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 LRRC37A2A6NM11 1700 aa13.44□□□□□ -0.26
CCDC88C-208ENST00000554165 KLF18A0A0U1RQI7 1052 aa13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 DUSP11O75319 330 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 C6orf222P0C671 652 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 EIF2AK2P19525 551 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 EDNRBP24530 442 aa13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 KIF5BP33176 963 aa13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 APOBRQ0VD83 1088 aa13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 KCNA10Q16322 511 aa13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 CCSAPQ6IQ19 270 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 TMTC3Q6ZXV5 915 aa13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 KLHDC9Q8NEP7 349 aa13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 ZFP91Q96JP5 570 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 SPZ1Q9BXG8 430 aa13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 FAM217BQ9NTX9 383 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 ADD3Q9UEY8 706 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 NAP1L2Q9ULW6 460 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-208ENST00000554165 DYNC1LI2O43237 492 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 CASTP20810 708 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 RPS6KB1P23443 525 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 CDC27P30260 824 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 HSD17B4P51659 736 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 RTP1P59025 263 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 PDE4DQ08499 809 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 BLOC1S2Q6QNY1 142 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 SLC39A5Q6ZMH5 540 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 Q6ZUG5 572 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 RNF180Q86T96 592 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 MCF2L2Q86YR7 1114 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 IL31RAQ8NI17 732 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 COPS5Q92905 334 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 RMDN3Q96TC7 470 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 LARP6Q9BRS8 491 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 UPF3AQ9H1J1 476 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 VTA1Q9NP79 307 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 PHF24Q9UPV7 400 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 COLQQ9Y215 455 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 GNEQ9Y223 722 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 NR2E3Q9Y5X4 410 aa13.42□□□□□ -0.26
CCDC88C-208ENST00000554165 A0A1W2PQ45 241 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 A0A1W2PQY0 241 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 ZBTB43O43298 467 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 SEC24BO95487 1268 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 CALM1P0DP23 149 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 CALM2P0DP24 149 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 CALM3P0DP25 149 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 ACLYP53396 1101 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 GJA9P57773 515 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 FUT2Q10981 343 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 TRIM60Q495X7 471 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 GNASQ5JWF2 1037 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 IQSEC1Q6DN90 963 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 CHRDL2Q6WN34 429 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 TLK2Q86UE8 772 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms