RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 CYTH3O43739 400 aa17.78■□□□□ 0.44
SHMT2-204ENST00000553324 PGK1P00558 417 aa17.78■□□□□ 0.44
SHMT2-204ENST00000553324 SLC30A10Q6XR72 485 aa17.78■□□□□ 0.44
SHMT2-204ENST00000553324 NOL8Q76FK4 1167 aaKnown RBP17.78■□□□□ 0.44
SHMT2-204ENST00000553324 HOMER1Q86YM7 354 aa17.78■□□□□ 0.44
SHMT2-204ENST00000553324 FANCBQ8NB91 859 aa17.78■□□□□ 0.44
SHMT2-204ENST00000553324 PCSK9Q8NBP7 692 aaKnown RBP17.78■□□□□ 0.44
SHMT2-204ENST00000553324 NSUN6Q8TEA1 469 aaKnown RBP17.78■□□□□ 0.44
SHMT2-204ENST00000553324 RRP36Q96EU6 259 aaKnown RBP17.78■□□□□ 0.44
SHMT2-204ENST00000553324 PIGSQ96S52 555 aa17.78■□□□□ 0.44
SHMT2-204ENST00000553324 IWS1Q96ST2 819 aa17.78■□□□□ 0.44
SHMT2-204ENST00000553324 GPHNQ9NQX3 736 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-204ENST00000553324 Q9Y3F1 56 aa17.78■□□□□ 0.44
SHMT2-204ENST00000553324 ASTN1O14525 1302 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 MOXD2PA6NHM9 499 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 ADAMTS4O75173 837 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 GJA9P57773 515 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 FGD1P98174 961 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 PDE4DQ08499 809 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 ADCK5Q3MIX3 580 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 KLHDC9Q8NEP7 349 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 SYTL5Q8TDW5 730 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-204ENST00000553324 PURBQ96QR8 312 aaKnown RBP17.77■□□□□ 0.44
SHMT2-204ENST00000553324 LRRC2Q9BYS8 371 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 SEC63Q9UGP8 760 aaKnown RBP17.77■□□□□ 0.44
SHMT2-204ENST00000553324 PHF24Q9UPV7 400 aa17.77■□□□□ 0.44
SHMT2-204ENST00000553324 CFBP00751 764 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 EDNRBP24530 442 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 CST5P28325 142 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-204ENST00000553324 ADCYAP1R1P41586 468 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 NKX3-2P78367 333 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 GHRHRQ02643 423 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 PPP2R5BQ15173 497 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 C1orf53Q5VUE5 145 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 TAPT1Q6NXT6 567 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 BLOC1S2Q6QNY1 142 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 SLC39A5Q6ZMH5 540 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 EEPD1Q7L9B9 569 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 MYL10Q9BUA6 226 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 AP5M1Q9H0R1 490 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 RBM28Q9NW13 759 aaKnown RBP17.76■□□□□ 0.43
SHMT2-204ENST00000553324 SNX14Q9Y5W7 946 aa17.76■□□□□ 0.43
SHMT2-204ENST00000553324 PLXNA1Q9UIW2 1896 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 SYNRGQ9UMZ2 1314 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 ZEB2O60315 1214 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 C6orf222P0C671 652 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-204ENST00000553324 RCAN1P53805 252 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 LRRC26Q2I0M4 334 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 GNASQ5JWF2 1037 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 ARHGEF16Q5VV41 709 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 FBXO16Q8IX29 292 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-204ENST00000553324 C7orf61Q8IZ16 206 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 FBXL16Q8N461 479 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 TBC1D5Q92609 795 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 JAKMIP1Q96N16 626 aaKnown RBP17.75■□□□□ 0.43
SHMT2-204ENST00000553324 RMDN3Q96TC7 470 aa17.75■□□□□ 0.43
SHMT2-204ENST00000553324 UPF3AQ9H1J1 476 aaKnown RBP17.75■□□□□ 0.43
SHMT2-204ENST00000553324 GNEQ9Y223 722 aaKnown RBP17.75■□□□□ 0.43
SHMT2-204ENST00000553324 RBM47A0AV96 593 aaKnown RBP17.74■□□□□ 0.43
SHMT2-204ENST00000553324 GCOM1H8Y6P7 765 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-204ENST00000553324 NKRFO15226 690 aaKnown RBP eCLIP17.74■□□□□ 0.43
SHMT2-204ENST00000553324 ZBTB43O43298 467 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 PPP1R11O60927 126 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-204ENST00000553324 POLR2MP0CAP2 368 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 HSD17B4P51659 736 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 ATN1P54259 1190 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-204ENST00000553324 COL9A3Q14050 684 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-204ENST00000553324 STXBP2Q15833 593 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 KCNA10Q16322 511 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 SLC35G1Q2M3R5 365 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 APOA5Q6Q788 366 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 MICU3Q86XE3 530 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 SRBD1Q8N5C6 995 aaKnown RBP17.74■□□□□ 0.43
SHMT2-204ENST00000553324 TAAR1Q96RJ0 339 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 USP26Q9BXU7 913 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 WDR11Q9BZH6 1224 aa17.74■□□□□ 0.43
SHMT2-204ENST00000553324 CCDC196A0A1B0GTZ2 297 aa17.73■□□□□ 0.43
SHMT2-204ENST00000553324 DYNC1LI2O43237 492 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-204ENST00000553324 SMPD1P17405 629 aa17.73■□□□□ 0.43
SHMT2-204ENST00000553324 ACLYP53396 1101 aa17.73■□□□□ 0.43
SHMT2-204ENST00000553324 DUSP28Q4G0W2 176 aa17.73■□□□□ 0.43
SHMT2-204ENST00000553324 CCSAPQ6IQ19 270 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-204ENST00000553324 TLK2Q86UE8 772 aa17.73■□□□□ 0.43
SHMT2-204ENST00000553324 SCFD2Q8WU76 684 aa17.73■□□□□ 0.43
SHMT2-204ENST00000553324 FERMT2Q96AC1 680 aa17.73■□□□□ 0.43
SHMT2-204ENST00000553324 LENG1Q96BZ8 264 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-204ENST00000553324 GLT1D1Q96MS3 346 aa17.73■□□□□ 0.43
SHMT2-204ENST00000553324 PDGFCQ9NRA1 345 aa17.73■□□□□ 0.43
SHMT2-204ENST00000553324 ELP1O95163 1332 aa17.72■□□□□ 0.43
SHMT2-204ENST00000553324 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-204ENST00000553324 A0A1W2PQ45 241 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-204ENST00000553324 A0A1W2PQY0 241 aa17.72■□□□□ 0.43
SHMT2-204ENST00000553324 EIF3JO75822 258 aaKnown RBP17.72■□□□□ 0.43
SHMT2-204ENST00000553324 CABYRO75952 493 aa17.72■□□□□ 0.43
SHMT2-204ENST00000553324 RXRAP19793 462 aa17.72■□□□□ 0.43
SHMT2-204ENST00000553324 SNX17Q15036 470 aa17.72■□□□□ 0.43
SHMT2-204ENST00000553324 RTN1Q16799 776 aa17.72■□□□□ 0.43
SHMT2-204ENST00000553324 BRDTQ58F21 947 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-204ENST00000553324 TMTC3Q6ZXV5 915 aa17.72■□□□□ 0.43
SHMT2-204ENST00000553324 PIBF1Q8WXW3 757 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms