RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 DEFB118Q96PH6 123 aa16.34■□□□□ 0.21
PTCH1-226ENST00000553011 C22orf23Q9BZE7 217 aa16.34■□□□□ 0.21
PTCH1-226ENST00000553011 SEC63Q9UGP8 760 aaKnown RBP16.34■□□□□ 0.21
PTCH1-226ENST00000553011 BRCA2P51587 3418 aa16.33■□□□□ 0.2
PTCH1-226ENST00000553011 SNAI1O95863 264 aaPredicted RBP16.33■□□□□ 0.2
PTCH1-226ENST00000553011 AK2P54819 239 aa16.33■□□□□ 0.2
PTCH1-226ENST00000553011 CCT2P78371 535 aaKnown RBP16.33■□□□□ 0.2
PTCH1-226ENST00000553011 ARMCX2Q7L311 632 aa16.33■□□□□ 0.2
PTCH1-226ENST00000553011 MSL3Q8N5Y2 521 aaKnown RBP16.33■□□□□ 0.2
PTCH1-226ENST00000553011 RGS22Q8NE09 1264 aa16.33■□□□□ 0.2
PTCH1-226ENST00000553011 U2AF1L4Q8WU68 220 aaKnown RBP16.33■□□□□ 0.2
PTCH1-226ENST00000553011 NCOA5Q9HCD5 579 aaKnown RBP16.33■□□□□ 0.2
PTCH1-226ENST00000553011 SYNGAP1Q96PV0 1343 aa16.33■□□□□ 0.2
PTCH1-226ENST00000553011 CCDC196A0A1B0GTZ2 297 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 CFBP00751 764 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 CNGA1P29973 690 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 GJA8P48165 433 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 NEK4P51957 841 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 TRAF1Q13077 416 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 STK3Q13188 491 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 PPP2R5BQ15173 497 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 MCF2L2Q86YR7 1114 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 SYTL5Q8TDW5 730 aaPredicted RBP16.32■□□□□ 0.2
PTCH1-226ENST00000553011 SHISA4Q96DD7 197 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 KIF2CQ99661 725 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 ALDH8A1Q9H2A2 487 aaPredicted RBP16.32■□□□□ 0.2
PTCH1-226ENST00000553011 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.32■□□□□ 0.2
PTCH1-226ENST00000553011 COL20A1Q9P218 1284 aa16.32■□□□□ 0.2
PTCH1-226ENST00000553011 V9GY48 417 aaPredicted RBP16.32■□□□□ 0.2
PTCH1-226ENST00000553011 KIAA1217Q5T5P2 1943 aa16.31■□□□□ 0.2
PTCH1-226ENST00000553011 SGPL1O95470 568 aa16.31■□□□□ 0.2
PTCH1-226ENST00000553011 RBM25P49756 843 aaKnown RBP16.31■□□□□ 0.2
PTCH1-226ENST00000553011 ALDH5A1P51649 535 aaPredicted RBP16.31■□□□□ 0.2
PTCH1-226ENST00000553011 NOL8Q76FK4 1167 aaKnown RBP16.31■□□□□ 0.2
PTCH1-226ENST00000553011 GPKOWQ92917 476 aaPredicted RBP eCLIP16.31■□□□□ 0.2
PTCH1-226ENST00000553011 ZNF274Q96GC6 653 aaPredicted RBP16.31■□□□□ 0.2
PTCH1-226ENST00000553011 ZHX1Q9UKY1 873 aaPredicted RBP16.31■□□□□ 0.2
PTCH1-226ENST00000553011 TPCN1Q9ULQ1 816 aa16.31■□□□□ 0.2
PTCH1-226ENST00000553011 CNPY2Q9Y2B0 182 aa16.31■□□□□ 0.2
PTCH1-226ENST00000553011 ASB14A6NK59 587 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 PPFIA3O75145 1194 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 ZNF865P0CJ78 1059 aaPredicted RBP16.3■□□□□ 0.2
PTCH1-226ENST00000553011 HOXA13P31271 388 aaPredicted RBP16.3■□□□□ 0.2
PTCH1-226ENST00000553011 HSD17B4P51659 736 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 GHRHRQ02643 423 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 NTRK3Q16288 839 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 ANO1Q5XXA6 986 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 LHX8Q68G74 356 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 HEATR3Q7Z4Q2 680 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 TAAR1Q96RJ0 339 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 CRISPLD2Q9H0B8 497 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 ADD3Q9UEY8 706 aaKnown RBP16.3■□□□□ 0.2
PTCH1-226ENST00000553011 DDX20Q9UHI6 824 aaKnown RBP16.3■□□□□ 0.2
PTCH1-226ENST00000553011 NRBP1Q9UHY1 535 aa16.3■□□□□ 0.2
PTCH1-226ENST00000553011 SEPT4O43236 478 aa16.29■□□□□ 0.2
PTCH1-226ENST00000553011 TFRCP02786 760 aaKnown RBP16.29■□□□□ 0.2
PTCH1-226ENST00000553011 ACVR2BQ13705 512 aa16.29■□□□□ 0.2
PTCH1-226ENST00000553011 ANKRD1Q15327 319 aa16.29■□□□□ 0.2
PTCH1-226ENST00000553011 WWC2Q6AWC2 1192 aa16.29■□□□□ 0.2
PTCH1-226ENST00000553011 PHKBQ93100 1093 aa16.29■□□□□ 0.2
PTCH1-226ENST00000553011 BACH2Q9BYV9 841 aa16.29■□□□□ 0.2
PTCH1-226ENST00000553011 MAF1Q9H063 256 aa16.29■□□□□ 0.2
PTCH1-226ENST00000553011 KATNBL1Q9H079 304 aa16.29■□□□□ 0.2
PTCH1-226ENST00000553011 ABHD16BQ9H3Z7 469 aa16.29■□□□□ 0.2
PTCH1-226ENST00000553011 UPF2Q9HAU5 1272 aaKnown RBP16.29■□□□□ 0.2
PTCH1-226ENST00000553011 GCOM1H8Y6P7 765 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-226ENST00000553011 POLR2MP0CAP2 368 aa16.28■□□□□ 0.2
PTCH1-226ENST00000553011 IFNAR1P17181 557 aa16.28■□□□□ 0.2
PTCH1-226ENST00000553011 TYW1BQ6NUM6 668 aa16.28■□□□□ 0.2
PTCH1-226ENST00000553011 EEPD1Q7L9B9 569 aa16.28■□□□□ 0.2
PTCH1-226ENST00000553011 DNERQ8NFT8 737 aa16.28■□□□□ 0.2
PTCH1-226ENST00000553011 MORC4Q8TE76 937 aa16.28■□□□□ 0.2
PTCH1-226ENST00000553011 LENG1Q96BZ8 264 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-226ENST00000553011 RMDN3Q96TC7 470 aa16.28■□□□□ 0.2
PTCH1-226ENST00000553011 CEP290O15078 2479 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 PRPF3O43395 683 aaKnown RBP16.27■□□□□ 0.2
PTCH1-226ENST00000553011 PFKFB2O60825 505 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 LARGE1O95461 756 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 EIF2AK2P19525 551 aaKnown RBP16.27■□□□□ 0.2
PTCH1-226ENST00000553011 EDNRBP24530 442 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 RGS19P49795 217 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 SCRN1Q12765 414 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 PKN1Q16512 942 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 USP17L6PQ6QN14 398 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 FCHSD1Q86WN1 690 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 FBXO16Q8IX29 292 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-226ENST00000553011 SAMD3Q8N6K7 520 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 SLC26A6Q9BXS9 759 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 SLKQ9H2G2 1235 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-226ENST00000553011 OGDHLQ9ULD0 1010 aa16.27■□□□□ 0.2
PTCH1-226ENST00000553011 MYH7BA7E2Y1 1941 aa16.27■□□□□ 0.19
PTCH1-226ENST00000553011 LOC102724159A0A0B4J2E5 919 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 STXBP3O00186 592 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 CPLX1O14810 134 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 MSCO60682 206 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 DTNBO60941 627 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 SCG2P13521 617 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 AKR1A1P14550 325 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 NAPAP54920 295 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 PDE4DQ08499 809 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms