RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 MYH1P12882 1939 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 PHLPP1O60346 1717 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 MYH14Q7Z406 1995 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 TARSL2A2RTX5 802 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 EPHB6O15197 1021 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 RHOBTB3O94955 611 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 NTSR2O95665 410 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 FCER1AP12319 257 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 EEF1GP26641 437 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 IGHMBP2P38935 993 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 MAGEA9P43362 315 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 STK4Q13043 487 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 CCDC152Q4G0S7 254 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 ARL6IP4Q66PJ3 421 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 ANKRD40Q6AI12 368 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 ZNF662Q6ZS27 426 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 CREG2Q8IUH2 290 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 BLIDQ8IZY5 108 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 CTCFLQ8NI51 663 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 RPGRIP1Q96KN7 1286 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 RABEP2Q9H5N1 569 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 KAT14Q9H8E8 782 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 KBTBD4Q9NVX7 518 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 LRWD1Q9UFC0 647 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 CAPN6Q9Y6Q1 641 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 SHOX2O60902 331 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-212ENST00000552491 PPFIA4O75335 1185 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 CALM1P0DP23 149 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 CALM2P0DP24 149 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 CALM3P0DP25 149 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 TRIM21P19474 475 aaKnown RBP6.05□□□□□ -1.44
LIMA1-212ENST00000552491 DNM2P50570 870 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 TBC1D8BQ0IIM8 1120 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 KCNB1Q14721 858 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 MAP9Q49MG5 647 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 CERS3Q8IU89 383 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 CSGALNACT2Q8N6G5 542 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 AENQ8WTP8 325 aaKnown RBP6.05□□□□□ -1.44
LIMA1-212ENST00000552491 FAM84BQ96KN1 310 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-212ENST00000552491 LRRC1Q9BTT6 524 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 THAP9Q9H5L6 903 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 MLXIPQ9HAP2 919 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 DCP1AQ9NPI6 582 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-212ENST00000552491 EXOC1Q9NV70 894 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 SALL4Q9UJQ4 1053 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 FLT1P17948 1338 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 CYTH3O43739 400 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 KRT86O43790 486 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 ORC4O43929 436 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 CAMTA2O94983 1202 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 IDEP14735 1019 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 KRT83P78385 493 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 SLC7A5Q01650 507 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 INF2Q27J81 1249 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 TSR1Q2NL82 804 aaKnown RBP6.05□□□□□ -1.44
LIMA1-212ENST00000552491 FKBP15Q5T1M5 1219 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 DTHD1Q6ZMT9 781 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 IPO4Q8TEX9 1081 aaKnown RBP6.05□□□□□ -1.44
LIMA1-212ENST00000552491 NSUN4Q96CB9 384 aaKnown RBP6.05□□□□□ -1.44
LIMA1-212ENST00000552491 CNOT6LQ96LI5 555 aaKnown RBP6.05□□□□□ -1.44
LIMA1-212ENST00000552491 DRC1Q96MC2 740 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 PSMB7Q99436 277 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 EFCC1Q9HA90 598 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 JADE2Q9NQC1 790 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 IL17RBQ9NRM6 502 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 ARHGAP20Q9P2F6 1191 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 PCDHA6Q9UN73 950 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 PCDHA8Q9Y5H6 950 aa6.05□□□□□ -1.44
LIMA1-212ENST00000552491 EXOC5O00471 708 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 PSMA7O14818 248 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 MOCS3O95396 460 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 PLCG1P19174 1290 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 CXCR5P32302 372 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 CYLC1P35663 651 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 ZBED6P86452 979 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 MECOMQ03112 1051 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 TTC19Q6DKK2 380 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 SND1Q7KZF4 910 aaKnown RBP eCLIP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 GOLGA6L1Q8N7Z2 621 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 TSEN2Q8NCE0 465 aaKnown RBP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 EHBP1Q8NDI1 1231 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 CAGE1Q8TC20 777 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 SMARCC1Q92922 1105 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 P2RX5Q93086 422 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 CPVLQ9H3G5 476 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 BTG4Q9NY30 223 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 SNX12Q9UMY4 172 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 PCDHA4Q9UN74 947 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 JAG2Q9Y219 1238 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 NIP7Q9Y221 180 aaKnown RBP eCLIP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 KIAA1551Q9HCM1 1747 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 SCN7AQ01118 1682 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 GRIN2DO15399 1336 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 LAMB1P07942 1786 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 ANO9A1A5B4 782 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 GOLGA6BA6NDN3 693 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 NCK2O43639 380 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 USP17L8P0C7I0 530 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 PCP11498 1178 aaKnown RBP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 ERCC3P19447 782 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms