RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 IQSEC1Q6DN90 963 aa19.09■□□□□ 0.65
VPS29-207ENST00000549970 Q7L0L9 218 aa19.09■□□□□ 0.65
VPS29-207ENST00000549970 ADGRF4Q8IZF3 695 aa19.09■□□□□ 0.65
VPS29-207ENST00000549970 TOX2Q96NM4 488 aa19.09■□□□□ 0.65
VPS29-207ENST00000549970 AP5M1Q9H0R1 490 aa19.09■□□□□ 0.65
VPS29-207ENST00000549970 U3KPZ7 1027 aaPredicted RBP19.09■□□□□ 0.65
VPS29-207ENST00000549970 MROH7Q68CQ1 1323 aa19.08■□□□□ 0.65
VPS29-207ENST00000549970 A0A0U1RQG5 324 aaPredicted RBP19.08■□□□□ 0.64
VPS29-207ENST00000549970 SGSM2O43147 1006 aa19.08■□□□□ 0.64
VPS29-207ENST00000549970 NKX3-2P78367 333 aa19.08■□□□□ 0.64
VPS29-207ENST00000549970 SHHQ15465 462 aa19.08■□□□□ 0.64
VPS29-207ENST00000549970 FSCN1Q16658 493 aaKnown RBP19.08■□□□□ 0.64
VPS29-207ENST00000549970 C9orf50Q5SZB4 431 aa19.08■□□□□ 0.64
VPS29-207ENST00000549970 GPR153Q6NV75 609 aa19.08■□□□□ 0.64
VPS29-207ENST00000549970 DEFB123Q8N688 67 aa19.08■□□□□ 0.64
VPS29-207ENST00000549970 VAT1LQ9HCJ6 419 aa19.08■□□□□ 0.64
VPS29-207ENST00000549970 COL6A3P12111 3177 aa19.08■□□□□ 0.64
VPS29-207ENST00000549970 MYH6P13533 1939 aa19.08■□□□□ 0.64
VPS29-207ENST00000549970 LOC102724159A0A0B4J2E5 919 aa19.07■□□□□ 0.64
VPS29-207ENST00000549970 ARVCFO00192 962 aa19.07■□□□□ 0.64
VPS29-207ENST00000549970 PWP2Q15269 919 aaKnown RBP19.07■□□□□ 0.64
VPS29-207ENST00000549970 SEC23AQ15436 765 aa19.07■□□□□ 0.64
VPS29-207ENST00000549970 QRICH1Q2TAL8 776 aa19.07■□□□□ 0.64
VPS29-207ENST00000549970 CXCL17Q6UXB2 119 aa19.07■□□□□ 0.64
VPS29-207ENST00000549970 ABCB11O95342 1321 aa19.06■□□□□ 0.64
VPS29-207ENST00000549970 ZEB2O60315 1214 aa19.06■□□□□ 0.64
VPS29-207ENST00000549970 CDK7P50613 346 aa19.06■□□□□ 0.64
VPS29-207ENST00000549970 PDE4DQ08499 809 aa19.06■□□□□ 0.64
VPS29-207ENST00000549970 RALYLQ86SE5 291 aaKnown RBP19.06■□□□□ 0.64
VPS29-207ENST00000549970 STAG2Q8N3U4 1231 aa19.06■□□□□ 0.64
VPS29-207ENST00000549970 MPHOSPH6Q99547 160 aaKnown RBP19.06■□□□□ 0.64
VPS29-207ENST00000549970 WDR11Q9BZH6 1224 aa19.06■□□□□ 0.64
VPS29-207ENST00000549970 JMJD4Q9H9V9 463 aa19.06■□□□□ 0.64
VPS29-207ENST00000549970 Q9Y3F1 56 aa19.06■□□□□ 0.64
VPS29-207ENST00000549970 TAF6LQ9Y6J9 622 aa19.06■□□□□ 0.64
VPS29-207ENST00000549970 DUSP28Q4G0W2 176 aa19.05■□□□□ 0.64
VPS29-207ENST00000549970 FBXO11Q86XK2 927 aa19.05■□□□□ 0.64
VPS29-207ENST00000549970 DNERQ8NFT8 737 aa19.05■□□□□ 0.64
VPS29-207ENST00000549970 TBC1D5Q92609 795 aa19.05■□□□□ 0.64
VPS29-207ENST00000549970 TBX21Q9UL17 535 aa19.05■□□□□ 0.64
VPS29-207ENST00000549970 E7EWF7 191 aa19.04■□□□□ 0.64
VPS29-207ENST00000549970 IFIT3O14879 490 aaKnown RBP19.04■□□□□ 0.64
VPS29-207ENST00000549970 CABYRO75952 493 aa19.04■□□□□ 0.64
VPS29-207ENST00000549970 EDNRBP24530 442 aa19.04■□□□□ 0.64
VPS29-207ENST00000549970 EPHB4P54760 987 aa19.04■□□□□ 0.64
VPS29-207ENST00000549970 FPGSQ05932 587 aa19.04■□□□□ 0.64
VPS29-207ENST00000549970 CHST3Q7LGC8 479 aa19.04■□□□□ 0.64
VPS29-207ENST00000549970 FAM126BQ8IXS8 530 aa19.04■□□□□ 0.64
VPS29-207ENST00000549970 RGS22Q8NE09 1264 aa19.04■□□□□ 0.64
VPS29-207ENST00000549970 NCOA7Q8NI08 942 aa19.04■□□□□ 0.64
VPS29-207ENST00000549970 RBM47A0AV96 593 aaKnown RBP19.03■□□□□ 0.64
VPS29-207ENST00000549970 ERICH2A1L162 156 aa19.03■□□□□ 0.64
VPS29-207ENST00000549970 KLRF2D3W0D1 207 aa19.03■□□□□ 0.64
VPS29-207ENST00000549970 TLR3O15455 904 aaKnown RBP19.03■□□□□ 0.64
VPS29-207ENST00000549970 TIMP1P01033 207 aa19.03■□□□□ 0.64
VPS29-207ENST00000549970 ITGA7Q13683 1181 aa19.03■□□□□ 0.64
VPS29-207ENST00000549970 STOX1Q6ZVD7 989 aa19.03■□□□□ 0.64
VPS29-207ENST00000549970 SYTL5Q8TDW5 730 aaPredicted RBP19.03■□□□□ 0.64
VPS29-207ENST00000549970 MAP4K1Q92918 833 aa19.03■□□□□ 0.64
VPS29-207ENST00000549970 SENP2Q9HC62 589 aa19.03■□□□□ 0.64
VPS29-207ENST00000549970 MAD2L2Q9UI95 211 aa19.03■□□□□ 0.64
VPS29-207ENST00000549970 MRPL11Q9Y3B7 192 aaKnown RBP19.03■□□□□ 0.64
VPS29-207ENST00000549970 RBM8AQ9Y5S9 174 aaKnown RBP19.03■□□□□ 0.64
VPS29-207ENST00000549970 B4DLN1 442 aa19.02■□□□□ 0.64
VPS29-207ENST00000549970 MRPL12P52815 198 aaKnown RBP19.02■□□□□ 0.64
VPS29-207ENST00000549970 PSMC6P62333 389 aa19.02■□□□□ 0.64
VPS29-207ENST00000549970 WTAPQ15007 396 aa19.02■□□□□ 0.64
VPS29-207ENST00000549970 PPP2R5BQ15173 497 aa19.02■□□□□ 0.64
VPS29-207ENST00000549970 MCF2L2Q86YR7 1114 aa19.02■□□□□ 0.64
VPS29-207ENST00000549970 OR6J1Q8NGC5 347 aa19.02■□□□□ 0.64
VPS29-207ENST00000549970 TAAR1Q96RJ0 339 aa19.02■□□□□ 0.64
VPS29-207ENST00000549970 PPP1R12CQ9BZL4 782 aa19.02■□□□□ 0.64
VPS29-207ENST00000549970 COL20A1Q9P218 1284 aa19.02■□□□□ 0.64
VPS29-207ENST00000549970 GRIN2DO15399 1336 aa19.01■□□□□ 0.63
VPS29-207ENST00000549970 PALM3A6NDB9 673 aaPredicted RBP19.01■□□□□ 0.63
VPS29-207ENST00000549970 SART3Q15020 963 aaKnown RBP19.01■□□□□ 0.63
VPS29-207ENST00000549970 SLC43A3Q8NBI5 491 aa19.01■□□□□ 0.63
VPS29-207ENST00000549970 SCFD2Q8WU76 684 aa19.01■□□□□ 0.63
VPS29-207ENST00000549970 COPS5Q92905 334 aa19.01■□□□□ 0.63
VPS29-207ENST00000549970 RNPC3Q96LT9 517 aaKnown RBP19.01■□□□□ 0.63
VPS29-207ENST00000549970 AMNQ9BXJ7 453 aa19.01■□□□□ 0.63
VPS29-207ENST00000549970 MTMR10Q9NXD2 777 aa19.01■□□□□ 0.63
VPS29-207ENST00000549970 ZBTB5O15062 677 aa19■□□□□ 0.63
VPS29-207ENST00000549970 CFBP00751 764 aa19■□□□□ 0.63
VPS29-207ENST00000549970 CD4P01730 458 aa19■□□□□ 0.63
VPS29-207ENST00000549970 MYL3P08590 195 aa19■□□□□ 0.63
VPS29-207ENST00000549970 CPT1AP50416 773 aa19■□□□□ 0.63
VPS29-207ENST00000549970 GRM4Q14833 912 aa19■□□□□ 0.63
VPS29-207ENST00000549970 TMEM67Q5HYA8 995 aa19■□□□□ 0.63
VPS29-207ENST00000549970 MFSD5Q6N075 450 aa19■□□□□ 0.63
VPS29-207ENST00000549970 SKAP1Q86WV1 359 aa19■□□□□ 0.63
VPS29-207ENST00000549970 HOMER1Q86YM7 354 aa19■□□□□ 0.63
VPS29-207ENST00000549970 NSUN6Q8TEA1 469 aaKnown RBP19■□□□□ 0.63
VPS29-207ENST00000549970 FAM161BQ96MY7 647 aa19■□□□□ 0.63
VPS29-207ENST00000549970 RMDN3Q96TC7 470 aa19■□□□□ 0.63
VPS29-207ENST00000549970 MAF1Q9H063 256 aa19■□□□□ 0.63
VPS29-207ENST00000549970 BAZ2BQ9UIF8 2168 aaKnown RBP18.99■□□□□ 0.63
VPS29-207ENST00000549970 NKRFO15226 690 aaKnown RBP eCLIP18.99■□□□□ 0.63
VPS29-207ENST00000549970 PPP1R11O60927 126 aaPredicted RBP18.99■□□□□ 0.63
VPS29-207ENST00000549970 ARIH2O95376 493 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms