RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 TTBK2Q6IQ55 1244 aa15.14■□□□□ 0.01
PTCH1-218ENST00000548945 EEPD1Q7L9B9 569 aa15.14■□□□□ 0.01
PTCH1-218ENST00000548945 RPUSD2Q8IZ73 545 aaKnown RBP15.14■□□□□ 0.01
PTCH1-218ENST00000548945 YTHDC1Q96MU7 727 aaKnown RBP15.14■□□□□ 0.01
PTCH1-218ENST00000548945 GAS2L1Q99501 681 aaPredicted RBP15.14■□□□□ 0.01
PTCH1-218ENST00000548945 TOMM22Q9NS69 142 aa15.14■□□□□ 0.01
PTCH1-218ENST00000548945 POLR3EQ9NVU0 708 aa15.14■□□□□ 0.01
PTCH1-218ENST00000548945 MSRAQ9UJ68 235 aa15.14■□□□□ 0.01
PTCH1-218ENST00000548945 MTMR7Q9Y216 660 aa15.14■□□□□ 0.01
PTCH1-218ENST00000548945 REV3LO60673 3130 aa15.14■□□□□ 0.01
PTCH1-218ENST00000548945 WDR19Q8NEZ3 1342 aa15.14■□□□□ 0.01
PTCH1-218ENST00000548945 A0A0D9SFI3 127 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 GRXCR1A8MXD5 290 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 NFIBO00712 420 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 B4GALT4O60513 344 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 SUPT20HL2P0C7V6 817 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 SNHG28P0DPA3 235 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 PDHBP11177 359 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 SLC16A2P36021 539 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 PBX2P40425 430 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 CPT1AP50416 773 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 AKNAD1Q5T1N1 836 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 FAM227BQ96M60 508 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 MPHOSPH6Q99547 160 aaKnown RBP15.13■□□□□ 0.01
PTCH1-218ENST00000548945 WDR11Q9BZH6 1224 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 MAF1Q9H063 256 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 TRPV6Q9H1D0 765 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 DDX49Q9Y6V7 483 aaKnown RBP15.13■□□□□ 0.01
PTCH1-218ENST00000548945 MYH6P13533 1939 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 LAMA4Q16363 1823 aa15.13■□□□□ 0.01
PTCH1-218ENST00000548945 NKRFO15226 690 aaKnown RBP eCLIP15.12■□□□□ 0.01
PTCH1-218ENST00000548945 MFAP1P55081 439 aaKnown RBP15.12■□□□□ 0.01
PTCH1-218ENST00000548945 ZNF543Q08ER8 600 aa15.12■□□□□ 0.01
PTCH1-218ENST00000548945 AAMPQ13685 434 aa15.12■□□□□ 0.01
PTCH1-218ENST00000548945 RRP12Q5JTH9 1297 aaKnown RBP15.12■□□□□ 0.01
PTCH1-218ENST00000548945 DNERQ8NFT8 737 aa15.12■□□□□ 0.01
PTCH1-218ENST00000548945 CLEC4DQ8WXI8 215 aa15.12■□□□□ 0.01
PTCH1-218ENST00000548945 PURBQ96QR8 312 aaKnown RBP15.12■□□□□ 0.01
PTCH1-218ENST00000548945 ALDH8A1Q9H2A2 487 aaPredicted RBP15.12■□□□□ 0.01
PTCH1-218ENST00000548945 CXXC1Q9P0U4 656 aaPredicted RBP15.12■□□□□ 0.01
PTCH1-218ENST00000548945 UMODL1Q5DID0 1318 aa15.12■□□□□ 0.01
PTCH1-218ENST00000548945 CCDC171Q6TFL3 1326 aa15.12■□□□□ 0.01
PTCH1-218ENST00000548945 PTPDC1A2A3K4 754 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 B4DLN1 442 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 PFKMP08237 780 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 PTGS1P23219 599 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 EDNRBP24530 442 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 MRPL12P52815 198 aaKnown RBP15.11■□□□□ 0.01
PTCH1-218ENST00000548945 PURAQ00577 322 aaKnown RBP15.11■□□□□ 0.01
PTCH1-218ENST00000548945 BRDTQ58F21 947 aaPredicted RBP15.11■□□□□ 0.01
PTCH1-218ENST00000548945 TJAP1Q5JTD0 557 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 TMEM63BQ5T3F8 832 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 GPATCH4Q5T3I0 446 aaKnown RBP15.11■□□□□ 0.01
PTCH1-218ENST00000548945 RNF207Q6ZRF8 634 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 MFSD6Q6ZSS7 791 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 USP38Q8NB14 1042 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 RGS22Q8NE09 1264 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 WNT8AQ9H1J5 351 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 RNF41Q9H4P4 317 aaPredicted RBP15.11■□□□□ 0.01
PTCH1-218ENST00000548945 GPCPD1Q9NPB8 672 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 FRMPD2Q68DX3 1309 aaPredicted RBP15.11■□□□□ 0.01
PTCH1-218ENST00000548945 RAD50Q92878 1312 aa15.11■□□□□ 0.01
PTCH1-218ENST00000548945 SCN5AQ14524 2016 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 KIAA1217Q5T5P2 1943 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 KPNA6O60684 536 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 CCL23P55773 120 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 PSMC6P62333 389 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 RPS6P62753 249 aaKnown RBP15.1■□□□□ 0.01
PTCH1-218ENST00000548945 NMIQ13287 307 aaPredicted RBP15.1■□□□□ 0.01
PTCH1-218ENST00000548945 SLC30A10Q6XR72 485 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 ZNF589Q86UQ0 364 aaPredicted RBP15.1■□□□□ 0.01
PTCH1-218ENST00000548945 SCFD2Q8WU76 684 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 MTG1Q9BT17 334 aaPredicted RBP15.1■□□□□ 0.01
PTCH1-218ENST00000548945 PRDM12Q9H4Q4 367 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 SLC28A3Q9HAS3 691 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 GPHNQ9NQX3 736 aaPredicted RBP15.1■□□□□ 0.01
PTCH1-218ENST00000548945 TANC1Q9C0D5 1861 aa15.1■□□□□ 0.01
PTCH1-218ENST00000548945 TRIP12Q14669 1992 aaPredicted RBP15.09■□□□□ 0.01
PTCH1-218ENST00000548945 A6NJR5 290 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 CALML3P27482 149 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 HAND2P61296 217 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 PDE4DQ08499 809 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 PPP2R5BQ15173 497 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 CCDC178Q5BJE1 867 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 OTOP2Q7RTS6 562 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 DGKHQ86XP1 1220 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 OR6J1Q8NGC5 347 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 ATXN2LQ8WWM7 1075 aaKnown RBP15.09■□□□□ 0.01
PTCH1-218ENST00000548945 ESR2Q92731 530 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 CRBNQ96SW2 442 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 SLC4A7Q9Y6M7 1214 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 TNKSO95271 1327 aa15.09■□□□□ 0.01
PTCH1-218ENST00000548945 TRIM6-TRIM34B2RNG4 842 aa15.08■□□□□ 0
PTCH1-218ENST00000548945 RFC2P35250 354 aa15.08■□□□□ 0
PTCH1-218ENST00000548945 PTPN11Q06124 597 aaPredicted RBP15.08■□□□□ 0
PTCH1-218ENST00000548945 NFRKBQ6P4R8 1299 aa15.08■□□□□ 0
PTCH1-218ENST00000548945 VWCEQ96DN2 955 aa15.08■□□□□ 0
PTCH1-218ENST00000548945 NKX2-4Q9H2Z4 354 aa15.08■□□□□ 0
PTCH1-218ENST00000548945 TRMT13Q9NUP7 481 aaKnown RBP15.08■□□□□ 0
PTCH1-218ENST00000548945 PCDHA11Q9Y5I1 949 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms