RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 FSCN1Q16658 493 aaKnown RBP16.83■□□□□ 0.28
PTCH1-217ENST00000548420 ZNF467Q7Z7K2 595 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-217ENST00000548420 CRBNQ96SW2 442 aa16.83■□□□□ 0.28
PTCH1-217ENST00000548420 TRIP12Q14669 1992 aaPredicted RBP16.82■□□□□ 0.28
PTCH1-217ENST00000548420 ATG2AQ2TAZ0 1938 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 VWA5AO00534 786 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 BAIAP3O94812 1187 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 RFC2P35250 354 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 ARMCX2Q7L311 632 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 BANK1Q8NDB2 785 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.82■□□□□ 0.28
PTCH1-217ENST00000548420 PPP1R13LQ8WUF5 828 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 RAD9AQ99638 391 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 ZBED2Q9BTP6 218 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 SEZ6LQ9BYH1 1024 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 PIH1D3Q9NQM4 214 aaKnown RBP16.82■□□□□ 0.28
PTCH1-217ENST00000548420 CLDND1Q9NY35 253 aa16.82■□□□□ 0.28
PTCH1-217ENST00000548420 GJB5O95377 273 aa16.81■□□□□ 0.28
PTCH1-217ENST00000548420 TNFAIP2Q03169 654 aa16.81■□□□□ 0.28
PTCH1-217ENST00000548420 FBXO22Q8NEZ5 403 aa16.81■□□□□ 0.28
PTCH1-217ENST00000548420 DDX11Q96FC9 970 aa16.81■□□□□ 0.28
PTCH1-217ENST00000548420 POP1Q99575 1024 aaKnown RBP16.81■□□□□ 0.28
PTCH1-217ENST00000548420 LRRCC1Q9C099 1032 aa16.81■□□□□ 0.28
PTCH1-217ENST00000548420 DYNC1LI2O43237 492 aaPredicted RBP16.8■□□□□ 0.28
PTCH1-217ENST00000548420 PDGFBP01127 241 aaPredicted RBP16.8■□□□□ 0.28
PTCH1-217ENST00000548420 IFIT2P09913 472 aaKnown RBP16.8■□□□□ 0.28
PTCH1-217ENST00000548420 KCNJ6P48051 423 aa16.8■□□□□ 0.28
PTCH1-217ENST00000548420 GABPAQ06546 454 aa16.8■□□□□ 0.28
PTCH1-217ENST00000548420 AAMPQ13685 434 aa16.8■□□□□ 0.28
PTCH1-217ENST00000548420 CTC1Q2NKJ3 1217 aa16.8■□□□□ 0.28
PTCH1-217ENST00000548420 DGLUCYQ7Z3D6 616 aa16.8■□□□□ 0.28
PTCH1-217ENST00000548420 RPAINQ86UA6 219 aa16.8■□□□□ 0.28
PTCH1-217ENST00000548420 TLK2Q86UE8 772 aa16.8■□□□□ 0.28
PTCH1-217ENST00000548420 CCDC144CPQ8IYA2 1237 aa16.8■□□□□ 0.28
PTCH1-217ENST00000548420 MAGEB6Q8N7X4 407 aa16.8■□□□□ 0.28
PTCH1-217ENST00000548420 STXBP3O00186 592 aa16.79■□□□□ 0.28
PTCH1-217ENST00000548420 GALR2O43603 387 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-217ENST00000548420 SMPD1P17405 629 aa16.79■□□□□ 0.28
PTCH1-217ENST00000548420 COL9A2Q14055 689 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-217ENST00000548420 TMED8Q6PL24 325 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-217ENST00000548420 FRMD5Q7Z6J6 570 aa16.79■□□□□ 0.28
PTCH1-217ENST00000548420 ANTXR1Q9H6X2 564 aa16.79■□□□□ 0.28
PTCH1-217ENST00000548420 VCPKMTQ9H867 229 aa16.79■□□□□ 0.28
PTCH1-217ENST00000548420 RALYQ9UKM9 306 aaKnown RBP16.79■□□□□ 0.28
PTCH1-217ENST00000548420 DDX49Q9Y6V7 483 aaKnown RBP16.79■□□□□ 0.28
PTCH1-217ENST00000548420 CEP250Q9BV73 2442 aa16.79■□□□□ 0.28
PTCH1-217ENST00000548420 SPTBN2O15020 2390 aa16.79■□□□□ 0.28
PTCH1-217ENST00000548420 MPHOSPH10O00566 681 aaKnown RBP16.78■□□□□ 0.28
PTCH1-217ENST00000548420 SMARCA5O60264 1052 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-217ENST00000548420 SUPT20HL2P0C7V6 817 aa16.78■□□□□ 0.28
PTCH1-217ENST00000548420 ATP5JP18859 108 aa16.78■□□□□ 0.28
PTCH1-217ENST00000548420 SIGLEC14Q08ET2 396 aa16.78■□□□□ 0.28
PTCH1-217ENST00000548420 TIGD5Q53EQ6 642 aa16.78■□□□□ 0.28
PTCH1-217ENST00000548420 FAM117BQ6P1L5 589 aa16.78■□□□□ 0.28
PTCH1-217ENST00000548420 NOL8Q76FK4 1167 aaKnown RBP16.78■□□□□ 0.28
PTCH1-217ENST00000548420 TMX2Q9Y320 296 aa16.78■□□□□ 0.28
PTCH1-217ENST00000548420 PITPNM1O00562 1244 aa16.77■□□□□ 0.28
PTCH1-217ENST00000548420 WDR46O15213 610 aaKnown RBP16.77■□□□□ 0.28
PTCH1-217ENST00000548420 KDM4AO75164 1064 aa16.77■□□□□ 0.28
PTCH1-217ENST00000548420 NKD2Q969F2 451 aaPredicted RBP16.77■□□□□ 0.28
PTCH1-217ENST00000548420 COL26A1Q96A83 441 aa16.77■□□□□ 0.28
PTCH1-217ENST00000548420 PDGFCQ9NRA1 345 aa16.77■□□□□ 0.28
PTCH1-217ENST00000548420 PPP1R9AQ9ULJ8 1098 aa16.77■□□□□ 0.28
PTCH1-217ENST00000548420 USP24Q9UPU5 2620 aa16.77■□□□□ 0.27
PTCH1-217ENST00000548420 LOC730098B7Z3J9 87 aa16.76■□□□□ 0.27
PTCH1-217ENST00000548420 COPB2P35606 906 aa16.76■□□□□ 0.27
PTCH1-217ENST00000548420 HDAC1Q13547 482 aaPredicted RBP16.76■□□□□ 0.27
PTCH1-217ENST00000548420 TTF1Q15361 905 aaPredicted RBP16.76■□□□□ 0.27
PTCH1-217ENST00000548420 TTC6Q86TZ1 520 aa16.76■□□□□ 0.27
PTCH1-217ENST00000548420 NSUN3Q9H649 340 aaKnown RBP16.76■□□□□ 0.27
PTCH1-217ENST00000548420 CTNNA3Q9UI47 895 aa16.76■□□□□ 0.27
PTCH1-217ENST00000548420 TBX10O75333 385 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 IDH1O75874 414 aaKnown RBP16.75■□□□□ 0.27
PTCH1-217ENST00000548420 USP5P45974 858 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 CNTN2Q02246 1040 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 SMAD4Q13485 552 aaKnown RBP16.75■□□□□ 0.27
PTCH1-217ENST00000548420 PTPROQ16827 1216 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 EPC2Q52LR7 807 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 SNRNP48Q6IEG0 339 aaKnown RBP16.75■□□□□ 0.27
PTCH1-217ENST00000548420 MIGA1Q8NAN2 632 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 RETREG2Q8NC44 543 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 HAUS7Q99871 368 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 AP5M1Q9H0R1 490 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 SUPT16HQ9Y5B9 1047 aaKnown RBP16.75■□□□□ 0.27
PTCH1-217ENST00000548420 SCN10AQ9Y5Y9 1956 aa16.75■□□□□ 0.27
PTCH1-217ENST00000548420 H3BNC9 293 aa16.74■□□□□ 0.27
PTCH1-217ENST00000548420 GTF2F1P35269 517 aaKnown RBP eCLIP16.74■□□□□ 0.27
PTCH1-217ENST00000548420 CBX2Q14781 532 aaPredicted RBP16.74■□□□□ 0.27
PTCH1-217ENST00000548420 ZEB2O60315 1214 aa16.73■□□□□ 0.27
PTCH1-217ENST00000548420 CYP7A1P22680 504 aa16.73■□□□□ 0.27
PTCH1-217ENST00000548420 NUBP1P53384 320 aa16.73■□□□□ 0.27
PTCH1-217ENST00000548420 HYAL1Q12794 435 aa16.73■□□□□ 0.27
PTCH1-217ENST00000548420 GPM6BQ13491 265 aa16.73■□□□□ 0.27
PTCH1-217ENST00000548420 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.73■□□□□ 0.27
PTCH1-217ENST00000548420 TEX13BQ9BXU2 312 aa16.73■□□□□ 0.27
PTCH1-217ENST00000548420 BOLA2Q9H3K6 86 aa16.73■□□□□ 0.27
PTCH1-217ENST00000548420 NAV1Q8NEY1 1877 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 GOLIM4O00461 696 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 LINC01565O15544 149 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 SLC4A3P48751 1232 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms