RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 LLPHQ9BRT6 129 aaKnown RBP15.86■□□□□ 0.13
PTCH1-213ENST00000546820 PSTPIP2Q9H939 334 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 BARHL2Q9NY43 387 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 LARGE1O95461 756 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 TAL1P17542 331 aaPredicted RBP15.85■□□□□ 0.13
PTCH1-213ENST00000546820 XBP1P17861 261 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 RPS6P62753 249 aaKnown RBP15.85■□□□□ 0.13
PTCH1-213ENST00000546820 UBXN2AP68543 259 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 OLFML2BQ68BL8 750 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 WWC2Q6AWC2 1192 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 PPP1R18Q6NYC8 613 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 ZNF467Q7Z7K2 595 aaPredicted RBP15.85■□□□□ 0.13
PTCH1-213ENST00000546820 MSL3Q8N5Y2 521 aaKnown RBP15.85■□□□□ 0.13
PTCH1-213ENST00000546820 FAM133AQ8N9E0 248 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 NPLOC4Q8TAT6 608 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 MAML3Q96JK9 1138 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 SH3GLB2Q9NR46 395 aa15.85■□□□□ 0.13
PTCH1-213ENST00000546820 ZSWIM8A7E2V4 1837 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 PLXNB2O15031 1838 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 SMCHD1A6NHR9 2005 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 LOC102724159A0A0B4J2E5 919 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 ASB14A6NK59 587 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 PPFIA3O75145 1194 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 HMGCRP04035 888 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 CNTN2Q02246 1040 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 PWP2Q15269 919 aaKnown RBP15.84■□□□□ 0.13
PTCH1-213ENST00000546820 PKN1Q16512 942 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 CCDC83Q8IWF9 413 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 FAM177A1Q8N128 213 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-213ENST00000546820 DNERQ8NFT8 737 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 TBC1D5Q92609 795 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 GPKOWQ92917 476 aaPredicted RBP eCLIP15.84■□□□□ 0.13
PTCH1-213ENST00000546820 TMX3Q96JJ7 454 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 ORC3Q9UBD5 711 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-213ENST00000546820 STK36Q9NRP7 1315 aa15.84■□□□□ 0.13
PTCH1-213ENST00000546820 SMCO2A6NFE2 343 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 STXBP3O00186 592 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 ELNP15502 786 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 GNA11P29992 359 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 HSD17B4P51659 736 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 GHRHRQ02643 423 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 CCDC148Q8NFR7 591 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 SMARCC2Q8TAQ2 1214 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 BICD2Q8TD16 824 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 TINF2Q9BSI4 451 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 C6orf50Q9HD87 102 aa15.83■□□□□ 0.12
PTCH1-213ENST00000546820 PIK3CDO00329 1044 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 OPLAHO14841 1288 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 CTDNEP1O95476 244 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 ADCY7P51828 1080 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 HMGN5P82970 282 aaKnown RBP15.82■□□□□ 0.12
PTCH1-213ENST00000546820 CCL14Q16627 93 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 ARHGEF16Q5VV41 709 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 MCTP2Q6DN12 878 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 MAMDC4Q6UXC1 1216 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 SLC30A10Q6XR72 485 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 NSUN7Q8NE18 718 aaKnown RBP15.82■□□□□ 0.12
PTCH1-213ENST00000546820 SYTL5Q8TDW5 730 aaPredicted RBP15.82■□□□□ 0.12
PTCH1-213ENST00000546820 NSUN6Q8TEA1 469 aaKnown RBP15.82■□□□□ 0.12
PTCH1-213ENST00000546820 SH3TC2Q8TF17 1288 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 TRIB2Q92519 343 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 RIC8AQ9NPQ8 531 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 ZNF236Q9UL36 1845 aa15.82■□□□□ 0.12
PTCH1-213ENST00000546820 ESYT2A0FGR8 921 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 SOWAHBA6NEL2 793 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 CD2BP2O95400 341 aaKnown RBP15.81■□□□□ 0.12
PTCH1-213ENST00000546820 HOXA13P31271 388 aaPredicted RBP15.81■□□□□ 0.12
PTCH1-213ENST00000546820 NLRP5P59047 1200 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 FCHSD1Q86WN1 690 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 TNS4Q8IZW8 715 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 SNX21Q969T3 373 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 SYNGAP1Q96PV0 1343 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 IWS1Q96ST2 819 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 RMDN3Q96TC7 470 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 ZMYND12Q9H0C1 365 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 EHMT1Q9H9B1 1298 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 FLRT1Q9NZU1 646 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 NRBP1Q9UHY1 535 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 CNPY2Q9Y2B0 182 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 KIF3AQ9Y496 699 aa15.81■□□□□ 0.12
PTCH1-213ENST00000546820 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.81■□□□□ 0.12
PTCH1-213ENST00000546820 SPDYE3A6NKU9 549 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 MEIS2O14770 477 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 FOSP01100 380 aaPredicted RBP15.8■□□□□ 0.12
PTCH1-213ENST00000546820 INHAP05111 366 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 CYP2C19P33261 490 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 ALDH5A1P51649 535 aaPredicted RBP15.8■□□□□ 0.12
PTCH1-213ENST00000546820 TRIM29Q14134 588 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 GALNT17Q6IS24 598 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 USP17L6PQ6QN14 398 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 FAM184AQ8NB25 1140 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 ARMC5Q96C12 935 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 TAAR1Q96RJ0 339 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 ALG1Q9BT22 464 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 HMX1Q9NP08 348 aaPredicted RBP15.8■□□□□ 0.12
PTCH1-213ENST00000546820 VPS54Q9P1Q0 977 aa15.8■□□□□ 0.12
PTCH1-213ENST00000546820 RPTORQ8N122 1335 aa15.79■□□□□ 0.12
PTCH1-213ENST00000546820 JAK2O60674 1132 aa15.79■□□□□ 0.12
PTCH1-213ENST00000546820 CACNB2Q08289 660 aaPredicted RBP15.79■□□□□ 0.12
PTCH1-213ENST00000546820 PDE4DQ08499 809 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms