RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TEX11Q8IYF3 940 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 MKRN1Q9UHC7 482 aaKnown RBP16.8■□□□□ 0.28
USP28-214ENST00000545540 BUB1O43683 1085 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 MOCS3O95396 460 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 DNAJC21Q5F1R6 531 aaKnown RBP16.8■□□□□ 0.28
USP28-214ENST00000545540 KCNK18Q7Z418 384 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 C10orf67Q8IYJ2 551 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 MMTAG2Q9BU76 263 aaKnown RBP16.8■□□□□ 0.28
USP28-214ENST00000545540 CAPN11Q9UMQ6 739 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 CAPN6Q9Y6Q1 641 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 TNNI2P48788 182 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 NAP1L1P55209 391 aaKnown RBP16.79■□□□□ 0.28
USP28-214ENST00000545540 COG1Q8WTW3 980 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 ERLIN1O75477 346 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 CCDC148Q8NFR7 591 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 ZHX3Q9H4I2 956 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 FLT1P17948 1338 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 MYMKA6NI61 221 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 TULP1O00294 542 aaPredicted RBP16.79■□□□□ 0.28
USP28-214ENST00000545540 RHOBTB3O94955 611 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 NONOQ15233 471 aaKnown RBP eCLIP16.79■□□□□ 0.28
USP28-214ENST00000545540 SBK1Q52WX2 424 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 SOGA3Q5TF21 947 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 MSANTD4Q8NCY6 345 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 CCDC42Q96M95 316 aa16.79■□□□□ 0.28
USP28-214ENST00000545540 ZNHIT6Q9NWK9 470 aaKnown RBP16.79■□□□□ 0.28
USP28-214ENST00000545540 IPO7O95373 1038 aaKnown RBP16.78■□□□□ 0.28
USP28-214ENST00000545540 GPS2Q13227 327 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 MIIPQ5JXC2 388 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 RRAGAQ7L523 313 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 TRAPPC11Q7Z392 1133 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 NELFCDQ8IXH7 590 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 RAB21Q9UL25 225 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 PALM3A6NDB9 673 aaPredicted RBP16.78■□□□□ 0.28
USP28-214ENST00000545540 UFL1O94874 794 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 TAL1P17542 331 aaPredicted RBP16.78■□□□□ 0.28
USP28-214ENST00000545540 WHAMMP3Q1A5X7 153 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 HSP90B2PQ58FF3 399 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 TTBK2Q6IQ55 1244 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 AMOTL1Q8IY63 956 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 DNAJC7Q99615 494 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 ANKRD2Q9GZV1 360 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 DEF6Q9H4E7 631 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 FAM204AQ9H8W3 233 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 CCNL1Q9UK58 526 aaPredicted RBP16.78■□□□□ 0.28
USP28-214ENST00000545540 NHSL1Q5SYE7 1610 aa16.78■□□□□ 0.28
USP28-214ENST00000545540 PDS5AQ29RF7 1337 aaKnown RBP16.78■□□□□ 0.28
USP28-214ENST00000545540 FAM196BA6NMK8 535 aa16.77■□□□□ 0.28
USP28-214ENST00000545540 SRGNP10124 158 aa16.77■□□□□ 0.28
USP28-214ENST00000545540 DNM2P50570 870 aa16.77■□□□□ 0.28
USP28-214ENST00000545540 NFRKBQ6P4R8 1299 aa16.77■□□□□ 0.28
USP28-214ENST00000545540 SEC63Q9UGP8 760 aaKnown RBP16.77■□□□□ 0.28
USP28-214ENST00000545540 NPHP3-ACAD11A0A0J9YXS1 232 aa16.77■□□□□ 0.28
USP28-214ENST00000545540 SHROOM1Q2M3G4 852 aaPredicted RBP16.77■□□□□ 0.28
USP28-214ENST00000545540 PROCA1Q8NCQ7 364 aaPredicted RBP16.77■□□□□ 0.28
USP28-214ENST00000545540 FGFBP2Q9BYJ0 223 aa16.77■□□□□ 0.28
USP28-214ENST00000545540 SALL4Q9UJQ4 1053 aa16.77■□□□□ 0.28
USP28-214ENST00000545540 BAG3O95817 575 aa16.77■□□□□ 0.27
USP28-214ENST00000545540 PCP11498 1178 aaKnown RBP16.77■□□□□ 0.27
USP28-214ENST00000545540 SNAP25P60880 206 aa16.77■□□□□ 0.27
USP28-214ENST00000545540 ECM1Q16610 540 aa16.77■□□□□ 0.27
USP28-214ENST00000545540 CT47A1Q5JQC4 288 aaPredicted RBP16.77■□□□□ 0.27
USP28-214ENST00000545540 NEK8Q86SG6 692 aa16.77■□□□□ 0.27
USP28-214ENST00000545540 SMARCC1Q92922 1105 aaPredicted RBP16.77■□□□□ 0.27
USP28-214ENST00000545540 HAUS4Q9H6D7 363 aa16.77■□□□□ 0.27
USP28-214ENST00000545540 NARFQ9UHQ1 456 aa16.77■□□□□ 0.27
USP28-214ENST00000545540 MYH10P35580 1976 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 ATP8B1O43520 1251 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 MARCH6O60337 910 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 FECHP22830 423 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 CCNE1P24864 410 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 EEF1GP26641 437 aaKnown RBP16.76■□□□□ 0.27
USP28-214ENST00000545540 EIF4A3P38919 411 aaKnown RBP16.76■□□□□ 0.27
USP28-214ENST00000545540 GPSM2P81274 684 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 NGLY1Q96IV0 654 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 MS4A14Q96JA4 679 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 CDK5RAP3Q96JB5 506 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 ARHGAP20Q9P2F6 1191 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 RTCBQ9Y3I0 505 aaKnown RBP16.76■□□□□ 0.27
USP28-214ENST00000545540 PLCH1Q4KWH8 1693 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 KRT86O43790 486 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 RFC4P35249 363 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 GFPT1Q06210 699 aaPredicted RBP16.76■□□□□ 0.27
USP28-214ENST00000545540 MFSD14BQ5SR56 506 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 TXLNBQ8N3L3 684 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 RRP36Q96EU6 259 aaKnown RBP16.76■□□□□ 0.27
USP28-214ENST00000545540 THAP9Q9H5L6 903 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 ARAP2Q8WZ64 1704 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 C6orf229H3BNL8 230 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 AKR1B10O60218 316 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 REXO1Q8N1G1 1221 aaKnown RBP16.76■□□□□ 0.27
USP28-214ENST00000545540 CCSER1Q9C0I3 900 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 EHD4Q9H223 541 aa16.76■□□□□ 0.27
USP28-214ENST00000545540 DMGDHQ9UI17 866 aaKnown RBP16.76■□□□□ 0.27
USP28-214ENST00000545540 PACSIN2Q9UNF0 486 aaPredicted RBP16.76■□□□□ 0.27
USP28-214ENST00000545540 KIF5AQ12840 1032 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 GRB10Q13322 594 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 TRIM14Q14142 442 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 TMED8Q6PL24 325 aaPredicted RBP16.75■□□□□ 0.27
USP28-214ENST00000545540 RSPH14Q9UHP6 348 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms