RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TSPY3P0CV98 308 aa15.25■□□□□ 0.03
USP28-212ENST00000544750 TSPY8P0CW00 308 aa15.25■□□□□ 0.03
USP28-212ENST00000544750 SLC1A4P43007 532 aa15.25■□□□□ 0.03
USP28-212ENST00000544750 TDO2P48775 406 aa15.25■□□□□ 0.03
USP28-212ENST00000544750 PURAQ00577 322 aaKnown RBP15.25■□□□□ 0.03
USP28-212ENST00000544750 KRT40Q6A162 431 aa15.25■□□□□ 0.03
USP28-212ENST00000544750 LRFN3Q9BTN0 628 aa15.25■□□□□ 0.03
USP28-212ENST00000544750 PRR12Q9ULL5 1215 aa15.25■□□□□ 0.03
USP28-212ENST00000544750 RBM47A0AV96 593 aaKnown RBP15.24■□□□□ 0.03
USP28-212ENST00000544750 ZFYP08048 801 aaPredicted RBP15.24■□□□□ 0.03
USP28-212ENST00000544750 SUPT20HL2P0C7V6 817 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 MCCP23508 829 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 SNAP25P60880 206 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 TFAP4Q01664 338 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 TAP1Q03518 808 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 RCSD1Q6JBY9 416 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 KIAA1211Q6ZU35 1233 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 KCTD1Q719H9 257 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 RASGRP2Q7LDG7 609 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 PHOSPHO2Q8TCD6 241 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 SLC9A7Q96T83 725 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 IL17RBQ9NRM6 502 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 POLR3EQ9NVU0 708 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 RCAN3Q9UKA8 241 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 COG5Q9UP83 839 aa15.24■□□□□ 0.03
USP28-212ENST00000544750 KIAA1217Q5T5P2 1943 aa15.23■□□□□ 0.03
USP28-212ENST00000544750 SIP14410 1827 aa15.23■□□□□ 0.03
USP28-212ENST00000544750 LOC102724159A0A0B4J2E5 919 aa15.23■□□□□ 0.03
USP28-212ENST00000544750 GTPBP6O43824 516 aaPredicted RBP15.23■□□□□ 0.03
USP28-212ENST00000544750 LPXNO60711 386 aa15.23■□□□□ 0.03
USP28-212ENST00000544750 NOVP48745 357 aa15.23■□□□□ 0.03
USP28-212ENST00000544750 PDE4BQ07343 736 aa15.23■□□□□ 0.03
USP28-212ENST00000544750 PWP2Q15269 919 aaKnown RBP15.23■□□□□ 0.03
USP28-212ENST00000544750 DEFB128Q7Z7B8 93 aa15.23■□□□□ 0.03
USP28-212ENST00000544750 SEC62Q99442 399 aaKnown RBP15.23■□□□□ 0.03
USP28-212ENST00000544750 CERS4Q9HA82 394 aa15.23■□□□□ 0.03
USP28-212ENST00000544750 C11orf16Q9NQ32 467 aa15.23■□□□□ 0.03
USP28-212ENST00000544750 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.23■□□□□ 0.03
USP28-212ENST00000544750 PITPNM1O00562 1244 aa15.22■□□□□ 0.03
USP28-212ENST00000544750 APPP05067 770 aa15.22■□□□□ 0.03
USP28-212ENST00000544750 ICAM1P05362 532 aa15.22■□□□□ 0.03
USP28-212ENST00000544750 IQCF3P0C7M6 154 aa15.22■□□□□ 0.03
USP28-212ENST00000544750 RFC2P35250 354 aa15.22■□□□□ 0.03
USP28-212ENST00000544750 ALDH5A1P51649 535 aaPredicted RBP15.22■□□□□ 0.03
USP28-212ENST00000544750 PPARAQ07869 468 aa15.22■□□□□ 0.03
USP28-212ENST00000544750 SKIV2LQ15477 1246 aaKnown RBP15.22■□□□□ 0.03
USP28-212ENST00000544750 NSMFQ6X4W1 530 aa15.22■□□□□ 0.03
USP28-212ENST00000544750 KHSRPQ92945 711 aaKnown RBP eCLIP15.22■□□□□ 0.03
USP28-212ENST00000544750 CHMP4CQ96CF2 233 aa15.22■□□□□ 0.03
USP28-212ENST00000544750 WDR11Q9BZH6 1224 aa15.22■□□□□ 0.03
USP28-212ENST00000544750 MUC6Q6W4X9 2439 aa15.21■□□□□ 0.03
USP28-212ENST00000544750 FOXP2O15409 715 aa15.21■□□□□ 0.03
USP28-212ENST00000544750 ACTN1P12814 892 aa15.21■□□□□ 0.03
USP28-212ENST00000544750 CPT1AP50416 773 aa15.21■□□□□ 0.03
USP28-212ENST00000544750 IKQ13123 557 aaPredicted RBP15.21■□□□□ 0.03
USP28-212ENST00000544750 BAATQ14032 418 aaPredicted RBP15.21■□□□□ 0.03
USP28-212ENST00000544750 NBPF20Q3BBV1 942 aa15.21■□□□□ 0.03
USP28-212ENST00000544750 TSHZ3Q63HK5 1081 aa15.21■□□□□ 0.03
USP28-212ENST00000544750 SPRED2Q7Z698 418 aa15.21■□□□□ 0.03
USP28-212ENST00000544750 HERC6Q8IVU3 1022 aa15.21■□□□□ 0.03
USP28-212ENST00000544750 MTG1Q9BT17 334 aaPredicted RBP15.21■□□□□ 0.03
USP28-212ENST00000544750 RANBP17Q9H2T7 1088 aaKnown RBP15.21■□□□□ 0.03
USP28-212ENST00000544750 CCPG1Q9ULG6 757 aa15.21■□□□□ 0.03
USP28-212ENST00000544750 MYH7BA7E2Y1 1941 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 NFIBO00712 420 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 NMT2O60551 498 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 MYL3P08590 195 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 GRB10Q13322 594 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 GPNMBQ14956 572 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 PPP4R3BQ5MIZ7 849 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 NFRKBQ6P4R8 1299 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 BTNL9Q6UXG8 535 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 CHMP4BQ9H444 224 aaKnown RBP15.2■□□□□ 0.02
USP28-212ENST00000544750 ADD3Q9UEY8 706 aaKnown RBP15.2■□□□□ 0.02
USP28-212ENST00000544750 ISY1Q9ULR0 285 aaKnown RBP15.2■□□□□ 0.02
USP28-212ENST00000544750 STX8Q9UNK0 236 aa15.2■□□□□ 0.02
USP28-212ENST00000544750 PIEZO1Q92508 2521 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 A6NJR5 290 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 GPR37L1O60883 481 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 PTPN11Q06124 597 aaPredicted RBP15.19■□□□□ 0.02
USP28-212ENST00000544750 TMEM31Q5JXX7 168 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 OR6J1Q8NGC5 347 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 PPP1R13LQ8WUF5 828 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 ARNTL2Q8WYA1 636 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 HLA-CQ95604 372 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 CTAGE1Q96RT6 745 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 NACAP1Q9BZK3 213 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 NAPBQ9H115 298 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 INCENPQ9NQS7 918 aa15.19■□□□□ 0.02
USP28-212ENST00000544750 MYH6P13533 1939 aa15.18■□□□□ 0.02
USP28-212ENST00000544750 NKRFO15226 690 aaKnown RBP eCLIP15.18■□□□□ 0.02
USP28-212ENST00000544750 BAIAP3O94812 1187 aa15.18■□□□□ 0.02
USP28-212ENST00000544750 SLC3A2P08195 630 aaKnown RBP15.18■□□□□ 0.02
USP28-212ENST00000544750 EDNRBP24530 442 aa15.18■□□□□ 0.02
USP28-212ENST00000544750 ZMYM1Q5SVZ6 1142 aa15.18■□□□□ 0.02
USP28-212ENST00000544750 TTBK2Q6IQ55 1244 aa15.18■□□□□ 0.02
USP28-212ENST00000544750 DCAF4Q8WV16 495 aa15.18■□□□□ 0.02
USP28-212ENST00000544750 CLEC4DQ8WXI8 215 aa15.18■□□□□ 0.02
USP28-212ENST00000544750 YTHDC1Q96MU7 727 aaKnown RBP15.18■□□□□ 0.02
USP28-212ENST00000544750 DCTPP1Q9H773 170 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms