RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PDE4DQ08499 809 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 DUSP28Q4G0W2 176 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 BRDTQ58F21 947 aaPredicted RBP15.36■□□□□ 0.05
RTN3-213ENST00000543552 MFSD5Q6N075 450 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 TAPT1Q6NXT6 567 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 EEPD1Q7L9B9 569 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 FAM126BQ8IXS8 530 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 TMEM199Q8N511 208 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 DNERQ8NFT8 737 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 ZSCAN10Q96SZ4 725 aaPredicted RBP15.36■□□□□ 0.05
RTN3-213ENST00000543552 ZKSCAN3Q9BRR0 538 aa15.36■□□□□ 0.05
RTN3-213ENST00000543552 B4E1Z4 1266 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 CPT1AP50416 773 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 IRX5P78411 483 aaPredicted RBP15.35■□□□□ 0.05
RTN3-213ENST00000543552 CXCL17Q6UXB2 119 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 SLC30A10Q6XR72 485 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 RGS22Q8NE09 1264 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 RUFY2Q8WXA3 655 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 CLEC4DQ8WXI8 215 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 ANKS1AQ92625 1134 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 WDR11Q9BZH6 1224 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 POLR3EQ9NVU0 708 aa15.35■□□□□ 0.05
RTN3-213ENST00000543552 NKRFO15226 690 aaKnown RBP eCLIP15.34■□□□□ 0.05
RTN3-213ENST00000543552 RPS6P62753 249 aaKnown RBP15.34■□□□□ 0.05
RTN3-213ENST00000543552 TRDNQ13061 729 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 ITGA7Q13683 1181 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 USH1GQ495M9 461 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 PSRC1Q6PGN9 363 aaPredicted RBP15.34■□□□□ 0.05
RTN3-213ENST00000543552 ENAHQ8N8S7 591 aaPredicted RBP15.34■□□□□ 0.05
RTN3-213ENST00000543552 SLC43A3Q8NBI5 491 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 SCFD2Q8WU76 684 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 PDGFCQ9NRA1 345 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 SUPT16HQ9Y5B9 1047 aaKnown RBP15.34■□□□□ 0.05
RTN3-213ENST00000543552 LCTP09848 1927 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 TNKSO95271 1327 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 ABCB11O95342 1321 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 UNC80Q8N2C7 3258 aa15.34■□□□□ 0.05
RTN3-213ENST00000543552 CDH23Q9H251 3354 aa15.33■□□□□ 0.05
RTN3-213ENST00000543552 RBM47A0AV96 593 aaKnown RBP15.33■□□□□ 0.04
RTN3-213ENST00000543552 DHX16O60231 1041 aaKnown RBP15.33■□□□□ 0.04
RTN3-213ENST00000543552 CD4P01730 458 aa15.33■□□□□ 0.04
RTN3-213ENST00000543552 PARP1P09874 1014 aaKnown RBP15.33■□□□□ 0.04
RTN3-213ENST00000543552 GOLGA8HP0CJ92 632 aa15.33■□□□□ 0.04
RTN3-213ENST00000543552 EPHB4P54760 987 aa15.33■□□□□ 0.04
RTN3-213ENST00000543552 PPP2R5BQ15173 497 aa15.33■□□□□ 0.04
RTN3-213ENST00000543552 CDC37Q16543 378 aaPredicted RBP15.33■□□□□ 0.04
RTN3-213ENST00000543552 IFIT1BQ5T764 474 aaKnown RBP15.33■□□□□ 0.04
RTN3-213ENST00000543552 TTC22Q5TAA0 569 aa15.33■□□□□ 0.04
RTN3-213ENST00000543552 MCF2L2Q86YR7 1114 aa15.33■□□□□ 0.04
RTN3-213ENST00000543552 FAM161BQ96MY7 647 aa15.33■□□□□ 0.04
RTN3-213ENST00000543552 GUCD1Q96NT3 240 aa15.33■□□□□ 0.04
RTN3-213ENST00000543552 PURBQ96QR8 312 aaKnown RBP15.33■□□□□ 0.04
RTN3-213ENST00000543552 MTIF3Q9H2K0 278 aaKnown RBP15.33■□□□□ 0.04
RTN3-213ENST00000543552 GPHNQ9NQX3 736 aaPredicted RBP15.33■□□□□ 0.04
RTN3-213ENST00000543552 ZSWIM5Q9P217 1185 aa15.33■□□□□ 0.04
RTN3-213ENST00000543552 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.32■□□□□ 0.04
RTN3-213ENST00000543552 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.32■□□□□ 0.04
RTN3-213ENST00000543552 KPNA6O60684 536 aa15.32■□□□□ 0.04
RTN3-213ENST00000543552 EDNRBP24530 442 aa15.32■□□□□ 0.04
RTN3-213ENST00000543552 OR6J1Q8NGC5 347 aa15.32■□□□□ 0.04
RTN3-213ENST00000543552 PPP1R12CQ9BZL4 782 aa15.32■□□□□ 0.04
RTN3-213ENST00000543552 UBA5Q9GZZ9 404 aa15.32■□□□□ 0.04
RTN3-213ENST00000543552 HIPK3Q9H422 1215 aa15.32■□□□□ 0.04
RTN3-213ENST00000543552 DDX49Q9Y6V7 483 aaKnown RBP15.32■□□□□ 0.04
RTN3-213ENST00000543552 SUPT20HL2P0C7V6 817 aa15.31■□□□□ 0.04
RTN3-213ENST00000543552 TRAF1Q13077 416 aa15.31■□□□□ 0.04
RTN3-213ENST00000543552 TTLL4Q14679 1199 aa15.31■□□□□ 0.04
RTN3-213ENST00000543552 ADGRF4Q8IZF3 695 aa15.31■□□□□ 0.04
RTN3-213ENST00000543552 SEMA6BQ9H3T3 888 aa15.31■□□□□ 0.04
RTN3-213ENST00000543552 MRPL11Q9Y3B7 192 aaKnown RBP15.31■□□□□ 0.04
RTN3-213ENST00000543552 U3KPZ7 1027 aaPredicted RBP15.31■□□□□ 0.04
RTN3-213ENST00000543552 ERICH2A1L162 156 aa15.3■□□□□ 0.04
RTN3-213ENST00000543552 CSF2RAP15509 400 aa15.3■□□□□ 0.04
RTN3-213ENST00000543552 SART3Q15020 963 aaKnown RBP15.3■□□□□ 0.04
RTN3-213ENST00000543552 FBXO11Q86XK2 927 aa15.3■□□□□ 0.04
RTN3-213ENST00000543552 NSUN6Q8TEA1 469 aaKnown RBP15.3■□□□□ 0.04
RTN3-213ENST00000543552 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.3■□□□□ 0.04
RTN3-213ENST00000543552 MTG1Q9BT17 334 aaPredicted RBP15.3■□□□□ 0.04
RTN3-213ENST00000543552 MYL3P08590 195 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 TXNP10599 105 aaKnown RBP15.29■□□□□ 0.04
RTN3-213ENST00000543552 GSPT1P15170 499 aaKnown RBP15.29■□□□□ 0.04
RTN3-213ENST00000543552 DNAJB2P25686 324 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 PDE4AP27815 886 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 CYP2C18P33260 490 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 PURAQ00577 322 aaKnown RBP15.29■□□□□ 0.04
RTN3-213ENST00000543552 QRICH1Q2TAL8 776 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 TMEM240Q5SV17 173 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 RALYLQ86SE5 291 aaKnown RBP15.29■□□□□ 0.04
RTN3-213ENST00000543552 IWS1Q96ST2 819 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 CDX2Q99626 313 aaPredicted RBP15.29■□□□□ 0.04
RTN3-213ENST00000543552 AMNQ9BXJ7 453 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 ALDH8A1Q9H2A2 487 aaPredicted RBP15.29■□□□□ 0.04
RTN3-213ENST00000543552 CPVLQ9H3G5 476 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 IL23AQ9NPF7 189 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 EYSQ5T1H1 3165 aa15.29■□□□□ 0.04
RTN3-213ENST00000543552 GRIN2DO15399 1336 aa15.28■□□□□ 0.04
RTN3-213ENST00000543552 A6NJR5 290 aa15.28■□□□□ 0.04
RTN3-213ENST00000543552 B4GALT4O60513 344 aa15.28■□□□□ 0.04
RTN3-213ENST00000543552 PSMC6P62333 389 aa15.28■□□□□ 0.04
RTN3-213ENST00000543552 STXBP2Q15833 593 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms