RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SUPT20HL2P0C7V6 817 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 CLK2P49760 499 aaKnown RBP5.79□□□□□ -1.48
LIMS1-214ENST00000542845 ZP2Q05996 745 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 FSCN1Q16658 493 aaKnown RBP5.79□□□□□ -1.48
LIMS1-214ENST00000542845 SNRNP48Q6IEG0 339 aaKnown RBP5.79□□□□□ -1.48
LIMS1-214ENST00000542845 EEPD1Q7L9B9 569 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 METTL3Q86U44 580 aaKnown RBP5.79□□□□□ -1.48
LIMS1-214ENST00000542845 TLK2Q86UE8 772 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 RNF135Q8IUD6 432 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 WDR63Q8IWG1 891 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 MRPL50Q8N5N7 158 aaKnown RBP5.79□□□□□ -1.48
LIMS1-214ENST00000542845 SLC43A3Q8NBI5 491 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 TGS1Q96RS0 853 aaKnown RBP5.79□□□□□ -1.48
LIMS1-214ENST00000542845 PRRX2Q99811 253 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 ABHD16BQ9H3Z7 469 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 CLDND1Q9NY35 253 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 PCDHGA10Q9Y5H3 936 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 ROBO3Q96MS0 1386 aa5.79□□□□□ -1.48
LIMS1-214ENST00000542845 PARP14Q460N5 1801 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 TNKSO95271 1327 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 MYH8P13535 1937 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 LINC01553A4QN01 128 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 SRGAP3O43295 1099 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 RGS20O76081 388 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 CSPG5O95196 566 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 CYP2E1P05181 493 aaPredicted RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 MYL3P08590 195 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 ARID4AP29374 1257 aaPredicted RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 ZAP70P43403 619 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 DEFB103AP81534 67 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 CNTN2Q02246 1040 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 CCDC158Q5M9N0 1113 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 FAM83BQ5T0W9 1011 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 MAMDC4Q6UXC1 1216 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 TRIM67Q6ZTA4 783 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 ARMCX2Q7L311 632 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 ASCL5Q7RTU5 278 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 ERMP1Q7Z2K6 904 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 ADHFE1Q8IWW8 467 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 CCDC144CPQ8IYA2 1237 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 MSL3Q8N5Y2 521 aaKnown RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 ZNF454Q8N9F8 522 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 NEK9Q8TD19 979 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 EDAQ92838 391 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 C17orf80Q9BSJ5 609 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 EHD4Q9H223 541 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 ALDH8A1Q9H2A2 487 aaPredicted RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 IGFLR1Q9H665 355 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 VCPKMTQ9H867 229 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 PRKRIP1Q9H875 184 aaPredicted RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 COPRSQ9NQ92 184 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 PIH1D3Q9NQM4 214 aaKnown RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 NPDC1Q9NQX5 325 aaPredicted RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 FAM217BQ9NTX9 383 aaPredicted RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 MCM9Q9NXL9 1143 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 PRKAG3Q9UGI9 489 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 NOD1Q9Y239 953 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 RIPK3Q9Y572 518 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 PCDHGA4Q9Y5G9 962 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 DDX49Q9Y6V7 483 aaKnown RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 TRIP12Q14669 1992 aaPredicted RBP5.78□□□□□ -1.48
LIMS1-214ENST00000542845 CACNA1AO00555 2505 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 USP34Q70CQ2 3546 aa5.78□□□□□ -1.48
LIMS1-214ENST00000542845 ASTN1O14525 1302 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 TRANK1O15050 2925 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 SIP14410 1827 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 STXBP3O00186 592 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 WDR46O15213 610 aaKnown RBP5.77□□□□□ -1.49
LIMS1-214ENST00000542845 KDM4AO75164 1064 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 IQCF3P0C7M6 154 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 CYP2D6P10635 497 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 AKR1B1P15121 316 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 COPB2P35606 906 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 WDR5P61964 334 aaKnown RBP5.77□□□□□ -1.49
LIMS1-214ENST00000542845 ICA1Q05084 483 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 G3BP1Q13283 466 aaKnown RBP eCLIP5.77□□□□□ -1.49
LIMS1-214ENST00000542845 CCDC184Q52MB2 194 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 HERC4Q5GLZ8 1057 aaPredicted RBP5.77□□□□□ -1.49
LIMS1-214ENST00000542845 TCEAL5Q5H9L2 206 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 TMEM63BQ5T3F8 832 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 TMEM179Q6ZVK1 233 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 SIAH1Q8IUQ4 282 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 FBXL6Q8N531 539 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 MAGEB6Q8N7X4 407 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.77□□□□□ -1.49
LIMS1-214ENST00000542845 DYNLL2Q96FJ2 89 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 POM121Q96HA1 1249 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 NUP88Q99567 741 aaPredicted RBP5.77□□□□□ -1.49
LIMS1-214ENST00000542845 RAD9AQ99638 391 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 SH2D4AQ9H788 454 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 RAVER2Q9HCJ3 691 aaKnown RBP5.77□□□□□ -1.49
LIMS1-214ENST00000542845 PDGFCQ9NRA1 345 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 HOMER2Q9NSB8 354 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 ZNF214Q9UL59 606 aaPredicted RBP5.77□□□□□ -1.49
LIMS1-214ENST00000542845 PPP1R9AQ9ULJ8 1098 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 TMX2Q9Y320 296 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 COL4A6Q14031 1691 aa5.77□□□□□ -1.49
LIMS1-214ENST00000542845 PTPRCP08575 1304 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 ZNF318Q5VUA4 2279 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 DNAJC25-GNG10A0A024R161 153 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms