RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 GJA3Q9Y6H8 435 aa16.39■□□□□ 0.21
CLIP1-216ENST00000541410 FAM83BQ5T0W9 1011 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 SYDE2Q5VT97 1194 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 CREBRFQ8IUR6 639 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 GMCL1P1Q8NEA9 526 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 ENOX1Q8TC92 643 aaKnown RBP16.38■□□□□ 0.21
CLIP1-216ENST00000541410 MTMR9Q96QG7 549 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 CCSER1Q9C0I3 900 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 BRCA1P38398 1863 aaKnown RBP16.38■□□□□ 0.21
CLIP1-216ENST00000541410 SYNRGQ9UMZ2 1314 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 MYO1BO43795 1136 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 SKILP12757 684 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 HOXA13P31271 388 aaPredicted RBP16.38■□□□□ 0.21
CLIP1-216ENST00000541410 ARMCX5Q6P1M9 558 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 NUDT12Q9BQG2 462 aa16.38■□□□□ 0.21
CLIP1-216ENST00000541410 DDX25Q9UHL0 483 aaKnown RBP16.38■□□□□ 0.21
CLIP1-216ENST00000541410 PRELPP51888 382 aa16.37■□□□□ 0.21
CLIP1-216ENST00000541410 PPP1R18Q6NYC8 613 aa16.37■□□□□ 0.21
CLIP1-216ENST00000541410 GMCL1Q96IK5 515 aa16.37■□□□□ 0.21
CLIP1-216ENST00000541410 ZNF18P17022 549 aa16.37■□□□□ 0.21
CLIP1-216ENST00000541410 AMNQ9BXJ7 453 aa16.37■□□□□ 0.21
CLIP1-216ENST00000541410 LRWD1Q9UFC0 647 aa16.37■□□□□ 0.21
CLIP1-216ENST00000541410 PRR12Q9ULL5 1215 aa16.37■□□□□ 0.21
CLIP1-216ENST00000541410 MEIS2O14770 477 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 MARCH6O60337 910 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 CCZ1BP86790 482 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 CCZ1P86791 482 aaPredicted RBP16.36■□□□□ 0.21
CLIP1-216ENST00000541410 DGKZQ13574 1117 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 RASA3Q14644 834 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 TBC1D10BQ4KMP7 808 aaPredicted RBP16.36■□□□□ 0.21
CLIP1-216ENST00000541410 CCDC174Q6PII3 467 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 FBXO11Q86XK2 927 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 IGSF22Q8N9C0 903 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 NLGN2Q8NFZ4 835 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 PYM1Q9BRP8 204 aaKnown RBP16.36■□□□□ 0.21
CLIP1-216ENST00000541410 ARHGEF10LQ9HCE6 1279 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 USP27XA6NNY8 438 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 ERCC5P28715 1186 aaPredicted RBP16.36■□□□□ 0.21
CLIP1-216ENST00000541410 PRCPP42785 496 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 KMT5BQ4FZB7 885 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 HAS1Q92839 578 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 KIFC2Q96AC6 838 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 ANO3Q9BYT9 981 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 SPTLC3Q9NUV7 552 aa16.36■□□□□ 0.21
CLIP1-216ENST00000541410 COL2A1P02458 1487 aaPredicted RBP16.35■□□□□ 0.21
CLIP1-216ENST00000541410 TRIM49BA6NDI0 452 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 HPS3Q969F9 1004 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 EEF2KMTQ96G04 330 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 AK8Q96MA6 479 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 FBXO28Q9NVF7 368 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 KBTBD4Q9NVX7 518 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 STAT2P52630 851 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 TBC1D5Q92609 795 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 ZBED3Q96IU2 234 aaPredicted RBP16.35■□□□□ 0.21
CLIP1-216ENST00000541410 C16orf45Q96MC5 204 aaPredicted RBP16.35■□□□□ 0.21
CLIP1-216ENST00000541410 VPS33BQ9H267 617 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 TRMT1Q9NXH9 659 aaKnown RBP16.35■□□□□ 0.21
CLIP1-216ENST00000541410 FZD1Q9UP38 647 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 TMX2Q9Y320 296 aa16.35■□□□□ 0.21
CLIP1-216ENST00000541410 KLRC4O43908 158 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 CAP2P40123 477 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 GMPSP49915 693 aaPredicted RBP16.34■□□□□ 0.21
CLIP1-216ENST00000541410 GRB10Q13322 594 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 TPD52L1Q16890 204 aaPredicted RBP16.34■□□□□ 0.21
CLIP1-216ENST00000541410 ZNF658Q5TYW1 1059 aaPredicted RBP16.34■□□□□ 0.21
CLIP1-216ENST00000541410 PRAMEF18Q5VWM3 479 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 SPATA1Q5VX52 437 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 MICALL2Q8IY33 904 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 NELFBQ8WX92 580 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 OPLAHO14841 1288 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 TEX33O43247 280 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 CBFA2T2O43439 604 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 MCM6Q14566 821 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 ECM1Q16610 540 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 TMEM266Q2M3C6 531 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 KCNK18Q7Z418 384 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 FCHSD1Q86WN1 690 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 MTMR14Q8NCE2 650 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 SNX29Q8TEQ0 813 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 CALML4Q96GE6 196 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 ZFP91Q96JP5 570 aaPredicted RBP16.34■□□□□ 0.21
CLIP1-216ENST00000541410 PNMA5Q96PV4 448 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 PGAP2Q9UHJ9 254 aa16.34■□□□□ 0.21
CLIP1-216ENST00000541410 SFPQP23246 707 aaKnown RBP eCLIP16.33■□□□□ 0.2
CLIP1-216ENST00000541410 PMS1P54277 932 aaKnown RBP16.33■□□□□ 0.2
CLIP1-216ENST00000541410 ASIC1P78348 528 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 TNIP1Q15025 636 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 DYMQ7RTS9 669 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 FAM83AQ86UY5 434 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 VSTM4Q8IW00 320 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 CDK5RAP3Q96JB5 506 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 GOPCQ9HD26 462 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 IMPACTQ9P2X3 320 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 CCT6AP40227 531 aaKnown RBP16.33■□□□□ 0.2
CLIP1-216ENST00000541410 STAT3P40763 770 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 GSDMDP57764 484 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 PPP4R3AQ6IN85 833 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 BLOC1S4Q9NUP1 217 aa16.33■□□□□ 0.2
CLIP1-216ENST00000541410 FCER1AP12319 257 aa16.32■□□□□ 0.2
CLIP1-216ENST00000541410 FXR2P51116 673 aaKnown RBP eCLIP16.32■□□□□ 0.24e-6■■■□□ 18.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms