RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 SNRNP48Q6IEG0 339 aaKnown RBP10.75□□□□□ -0.69
DDX55-208ENST00000541259 FBXO18Q8NFZ0 1043 aa10.75□□□□□ -0.69
DDX55-208ENST00000541259 OXER1Q8TDS5 423 aa10.75□□□□□ -0.69
DDX55-208ENST00000541259 FOXD4L4Q8WXT5 416 aaPredicted RBP10.75□□□□□ -0.69
DDX55-208ENST00000541259 TBC1D5Q92609 795 aa10.75□□□□□ -0.69
DDX55-208ENST00000541259 PHF20Q9BVI0 1012 aa10.75□□□□□ -0.69
DDX55-208ENST00000541259 HOMER2Q9NSB8 354 aa10.75□□□□□ -0.69
DDX55-208ENST00000541259 MTMR6Q9Y217 621 aa10.75□□□□□ -0.69
DDX55-208ENST00000541259 ZSWIM8A7E2V4 1837 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 THSD7BQ9C0I4 1608 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 SMCO2A6NFE2 343 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 H3BQV1 296 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 ATP2A1O14983 1001 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 PDCP20941 246 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 STAT3P40763 770 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 NLRP5P59047 1200 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 IFFO2Q5TF58 517 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 ANKRD13CQ8N6S4 541 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 MB21D1Q8N884 522 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 SMCR8Q8TEV9 937 aaPredicted RBP10.74□□□□□ -0.69
DDX55-208ENST00000541259 CLEC4DQ8WXI8 215 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 TRERF1Q96PN7 1200 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 PARK7Q99497 189 aaKnown RBP10.74□□□□□ -0.69
DDX55-208ENST00000541259 SPATC1LQ9H0A9 340 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 ZCCHC17Q9NP64 241 aaKnown RBP10.74□□□□□ -0.69
DDX55-208ENST00000541259 SH3GLB2Q9NR46 395 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 CPA4Q9UI42 421 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 RABGAP1Q9Y3P9 1069 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 KIF3AQ9Y496 699 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 ABCB11O95342 1321 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 ADGRA2Q96PE1 1338 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 PLXNA1Q9UIW2 1896 aa10.74□□□□□ -0.69
DDX55-208ENST00000541259 BTBD18B2RXH4 712 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 KIF28PB7ZC32 967 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 hCG_1984214I3L0E3 225 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 NFIBO00712 420 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 MMP1P03956 469 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 XBP1P17861 261 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 MAP2K2P36507 400 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 OAZ1P54368 228 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 ERVK-9P63128 1117 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 ERVK-24P63145 666 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 CRHR2Q13324 411 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 TRIM29Q14134 588 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 UBE2SQ16763 222 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 NOM1Q5C9Z4 860 aaKnown RBP10.73□□□□□ -0.69
DDX55-208ENST00000541259 FERMT3Q86UX7 667 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 RIOX2Q8IUF8 465 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 ZNF713Q8N859 430 aaPredicted RBP10.73□□□□□ -0.69
DDX55-208ENST00000541259 RASGRP4Q8TDF6 673 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 MOV10L1Q9BXT6 1211 aaKnown RBP10.73□□□□□ -0.69
DDX55-208ENST00000541259 TEX13BQ9BXU2 312 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 ZMYND12Q9H0C1 365 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 RIC8AQ9NPQ8 531 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 RNF146Q9NTX7 359 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 MRPL11Q9Y3B7 192 aaKnown RBP10.73□□□□□ -0.69
DDX55-208ENST00000541259 ARIH1Q9Y4X5 557 aaPredicted RBP10.73□□□□□ -0.69
DDX55-208ENST00000541259 PCNTO95613 3336 aa10.73□□□□□ -0.69
DDX55-208ENST00000541259 MCM3APO60318 1980 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 ESYT2A0FGR8 921 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 POTEB2H3BUK9 544 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 DPYSL4O14531 572 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 CA12O43570 354 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 BRD1O95696 1058 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 ZSCAN22P10073 491 aaPredicted RBP10.72□□□□□ -0.69
DDX55-208ENST00000541259 BCRP11274 1271 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 GCLCP48506 637 aaPredicted RBP10.72□□□□□ -0.69
DDX55-208ENST00000541259 ADCY7P51828 1080 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 NR5A1Q13285 461 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 EARS2Q5JPH6 523 aaKnown RBP10.72□□□□□ -0.69
DDX55-208ENST00000541259 MCTP1Q6DN14 999 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 PPP1R18Q6NYC8 613 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 USP17L6PQ6QN14 398 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 C17orf99Q6UX52 265 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 DIS3L2Q8IYB7 885 aaKnown RBP10.72□□□□□ -0.69
DDX55-208ENST00000541259 BLIDQ8IZY5 108 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 SLAIN1Q8ND83 568 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 GPRC5AQ8NFJ5 357 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 CCDC148Q8NFR7 591 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 CCDC12Q8WUD4 166 aaPredicted RBP10.72□□□□□ -0.69
DDX55-208ENST00000541259 PORCNQ9H237 461 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 PSTPIP2Q9H939 334 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 ZFYVE28Q9HCC9 887 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 C6orf50Q9HD87 102 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 TMEM260Q9NX78 707 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 MORF4L1Q9UBU8 362 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 BIN2Q9UBW5 565 aaPredicted RBP10.72□□□□□ -0.69
DDX55-208ENST00000541259 PCDHA6Q9UN73 950 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 PCDHA4Q9UN74 947 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 PCDHA8Q9Y5H6 950 aa10.72□□□□□ -0.69
DDX55-208ENST00000541259 FAM205CA6NFA0 338 aa10.71□□□□□ -0.69
DDX55-208ENST00000541259 M0R2N6 131 aa10.71□□□□□ -0.69
DDX55-208ENST00000541259 MEIS2O14770 477 aa10.71□□□□□ -0.69
DDX55-208ENST00000541259 TLR2O60603 784 aa10.71□□□□□ -0.69
DDX55-208ENST00000541259 TRPA1O75762 1119 aa10.71□□□□□ -0.69
DDX55-208ENST00000541259 TBC1D8O95759 1140 aa10.71□□□□□ -0.69
DDX55-208ENST00000541259 CFBP00751 764 aa10.71□□□□□ -0.69
DDX55-208ENST00000541259 ERCC3P19447 782 aa10.71□□□□□ -0.69
DDX55-208ENST00000541259 HOXA13P31271 388 aaPredicted RBP10.71□□□□□ -0.69
DDX55-208ENST00000541259 KRT2P35908 639 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 308.2 ms