RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 POLR2MP0CAP2 368 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 NAPAP54920 295 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 SLC35G1Q2M3R5 365 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 NSMFQ6X4W1 530 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 SLAIN1Q8ND83 568 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 PHKBQ93100 1093 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 INTS4Q96HW7 963 aaKnown RBP20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 PSTPIP2Q9H939 334 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 EHMT1Q9H9B1 1298 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 CYP39A1Q9NYL5 469 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 ORC3Q9UBD5 711 aaPredicted RBP20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 GJD2Q9UKL4 321 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 HTTP42858 3142 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 PTPDC1A2A3K4 754 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 ASB14A6NK59 587 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 FOSP01100 380 aaPredicted RBP20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 FLT3LGP49771 235 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 TRIM29Q14134 588 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 BECN1Q14457 450 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 OLFML2BQ68BL8 750 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 CCDC83Q8IWF9 413 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 NECAB1Q8N987 351 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 FAM184AQ8NB25 1140 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 CLEC4DQ8WXI8 215 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 USP6NLQ92738 828 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 A1CFQ9NQ94 594 aaKnown RBP20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 PTPN22Q9Y2R2 807 aa20.14■□□□□ 0.81
CLSTN3-210ENST00000540931 KIAA0100Q14667 2235 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 BAZ2BQ9UIF8 2168 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 DNAJC25-GNG10A0A024R161 153 aa20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 POTEFA5A3E0 1075 aa20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 HSD17B4P51659 736 aa20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 NSUN7Q8NE18 718 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 PIBF1Q8WXW3 757 aa20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 ARHGAP39Q9C0H5 1083 aa20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 ZMYND12Q9H0C1 365 aa20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 BRMS1Q9HCU9 246 aa20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 NRBP1Q9UHY1 535 aa20.13■□□□□ 0.81
CLSTN3-210ENST00000540931 STXBP3O00186 592 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 PPP1R11O60927 126 aaPredicted RBP20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 CFBP00751 764 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 CAPN2P17655 700 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 ADCY7P51828 1080 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 PRKCZQ05513 592 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 PKN1Q16512 942 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 MUM1L1Q5H9M0 696 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 WWC2Q6AWC2 1192 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 SMARCC2Q8TAQ2 1214 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 IWS1Q96ST2 819 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 RIC8AQ9NPQ8 531 aa20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 MKI67P46013 3256 aaKnown RBP20.12■□□□□ 0.81
CLSTN3-210ENST00000540931 SMCO2A6NFE2 343 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 NFIBO00712 420 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 PEX10O60683 326 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 LARGE1O95461 756 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 RPS6P62753 249 aaKnown RBP20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 AP3B2Q13367 1082 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 CUL4AQ13619 759 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 BAATQ14032 418 aaPredicted RBP20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 ZNF792Q3KQV3 632 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 MFSD14CQ5VZR4 134 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 FAM133AQ8N9E0 248 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 NSUN6Q8TEA1 469 aaKnown RBP20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 PLXNB2O15031 1838 aa20.11■□□□□ 0.81
CLSTN3-210ENST00000540931 SYNGAP1Q96PV0 1343 aa20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 SPDYE3A6NKU9 549 aa20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 PDCP20941 246 aa20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 CTGFP29279 349 aa20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 NLRP5P59047 1200 aa20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 UBXN2AP68543 259 aa20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 HABP4Q5JVS0 413 aaKnown RBP20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 XRRA1Q6P2D8 792 aa20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 MAMDC4Q6UXC1 1216 aa20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 SMC3Q9UQE7 1217 aa20.1■□□□□ 0.81
CLSTN3-210ENST00000540931 ADCY3O60266 1144 aa20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 STAM2O75886 525 aa20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 CTDNEP1O95476 244 aa20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 HMGCRP04035 888 aa20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 HSP90AA1P07900 732 aaKnown RBP20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 CYP2B6P20813 491 aa20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 GRK4P32298 578 aa20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 SAFBQ15424 915 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 GPKOWQ92917 476 aaPredicted RBP eCLIP20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 MAML3Q96JK9 1138 aa20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 ALG1Q9BT22 464 aa20.09■□□□□ 0.81
CLSTN3-210ENST00000540931 hCG_1642624A0A1W2PR95 340 aa20.08■□□□□ 0.81
CLSTN3-210ENST00000540931 DAGLBQ8NCG7 672 aa20.08■□□□□ 0.81
CLSTN3-210ENST00000540931 SYTL5Q8TDW5 730 aaPredicted RBP20.08■□□□□ 0.81
CLSTN3-210ENST00000540931 ARMC5Q96C12 935 aa20.08■□□□□ 0.81
CLSTN3-210ENST00000540931 CNPY2Q9Y2B0 182 aa20.08■□□□□ 0.81
CLSTN3-210ENST00000540931 COBLO75128 1261 aa20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 CD2BP2O95400 341 aaKnown RBP20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 CAP1Q01518 475 aa20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 SLC9C1Q4G0N8 1177 aa20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 ARHGEF16Q5VV41 709 aa20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 REXO1Q8N1G1 1221 aaKnown RBP20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 RMDN3Q96TC7 470 aa20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 TINF2Q9BSI4 451 aa20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 PCDHA4Q9UN74 947 aa20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 GABRQQ9UN88 632 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms