RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 RRP9O43818 475 aaKnown RBP15.54■□□□□ 0.08
USP3-204ENST00000540797 MMP1P03956 469 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 CHRNA5P30532 468 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 SNAP25P60880 206 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 PPP1R21Q6ZMI0 780 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 SLC17A8Q8NDX2 589 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 E9PCH4 1651 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 Q3C1V9 767 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 EP400NLQ6ZTU2 488 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 SYCE1Q8N0S2 351 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 CEP170P1Q96L14 293 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 SLF1Q9BQI6 1058 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 SETBP1Q9Y6X0 1596 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 ARHGAP6O43182 974 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 TICAM2Q86XR7 235 aa15.54■□□□□ 0.08
USP3-204ENST00000540797 APOBEC3FQ8IUX4 373 aaKnown RBP15.54■□□□□ 0.08
USP3-204ENST00000540797 MARCH10Q8NA82 808 aaPredicted RBP15.54■□□□□ 0.08
USP3-204ENST00000540797 U2AF1L4Q8WU68 220 aaKnown RBP15.54■□□□□ 0.08
USP3-204ENST00000540797 NRKQ7Z2Y5 1582 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 INO80B-WBP1J3KQ70 363 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 PPP6R2O75170 966 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 ABI1Q8IZP0 508 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 DCAF4Q8WV16 495 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 NACC1Q96RE7 527 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 INO80BQ9C086 356 aaPredicted RBP15.53■□□□□ 0.08
USP3-204ENST00000540797 MROH7-TTC4A0A0A0MT08 1334 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 EIF2AK2P19525 551 aaKnown RBP15.53■□□□□ 0.08
USP3-204ENST00000540797 XPO4Q9C0E2 1151 aaKnown RBP15.53■□□□□ 0.08
USP3-204ENST00000540797 WDR70Q9NW82 654 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 TUBBP07437 444 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 TRIM28Q13263 835 aaKnown RBP15.53■□□□□ 0.08
USP3-204ENST00000540797 TMEM63CQ9P1W3 806 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 ACTN4O43707 911 aaKnown RBP15.53■□□□□ 0.08
USP3-204ENST00000540797 CEP104O60308 925 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 HOXA13P31271 388 aaPredicted RBP15.53■□□□□ 0.08
USP3-204ENST00000540797 NR5A1Q13285 461 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 EXOC8Q8IYI6 725 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 STAG1Q8WVM7 1258 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 HESX1Q9UBX0 185 aa15.53■□□□□ 0.08
USP3-204ENST00000540797 KIF23Q02241 960 aaPredicted RBP15.52■□□□□ 0.08
USP3-204ENST00000540797 R3HDM1Q15032 1099 aaKnown RBP15.52■□□□□ 0.08
USP3-204ENST00000540797 MED14O60244 1454 aa15.52■□□□□ 0.08
USP3-204ENST00000540797 PNPLA6Q8IY17 1366 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 A0A1W2PQ27 194 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 A0A1W2PQ64 194 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 A0A1W2PQD8 194 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 USP17L5A8MUK1 530 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 ABL1P00519 1130 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 GAP43P17677 238 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 PKP1Q13835 747 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 BARGINQ6ZT62 677 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 PEX26Q7Z412 305 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 PPM1KQ8N3J5 372 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 UBLCP1Q8WVY7 318 aaPredicted RBP15.52■□□□□ 0.07
USP3-204ENST00000540797 ZNF215Q9UL58 517 aaPredicted RBP15.52■□□□□ 0.07
USP3-204ENST00000540797 RIPOR2Q9Y4F9 1068 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 FAM170AA1A519 330 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 XPOTO43592 962 aaKnown RBP15.52■□□□□ 0.07
USP3-204ENST00000540797 C8orf74Q6P047 294 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 RNF207Q6ZRF8 634 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 CEP128Q6ZU80 1094 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 IFIH1Q9BYX4 1025 aaKnown RBP15.52■□□□□ 0.07
USP3-204ENST00000540797 KMT5AQ9NQR1 393 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 NUB1Q9Y5A7 615 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 PTPRMP28827 1452 aa15.52■□□□□ 0.07
USP3-204ENST00000540797 FAM196BA6NMK8 535 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 TLR3O15455 904 aaKnown RBP15.51■□□□□ 0.07
USP3-204ENST00000540797 MYCP01106 439 aaPredicted RBP15.51■□□□□ 0.07
USP3-204ENST00000540797 PPP2R3AQ06190 1150 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 UAP1Q16222 522 aaPredicted RBP15.51■□□□□ 0.07
USP3-204ENST00000540797 FAM83BQ5T0W9 1011 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 HOXC10Q9NYD6 342 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 NECTIN1Q15223 517 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 PRKAG2Q9UGJ0 569 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 CAPN9O14815 690 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 GTF2F1P35269 517 aaKnown RBP eCLIP15.51■□□□□ 0.07
USP3-204ENST00000540797 FOXO4P98177 505 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 SLFNL1Q499Z3 407 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 C6orf163Q5TEZ5 329 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 POLR3EQ9NVU0 708 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 LAMC1P11047 1609 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 PPRC1Q5VV67 1664 aaKnown RBP15.51■□□□□ 0.07
USP3-204ENST00000540797 A0A0G2JLW4 131 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 PSAPP07602 524 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 RPS6KA1Q15418 735 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 OR8K1Q8NGG5 319 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 KCNK9Q9NPC2 374 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 HAUS2Q9NVX0 235 aa15.51■□□□□ 0.07
USP3-204ENST00000540797 UTP11Q9Y3A2 253 aaKnown RBP15.51■□□□□ 0.07
USP3-204ENST00000540797 TUBB2AQ13885 445 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 SEPT2Q15019 361 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 TUBB2BQ9BVA1 445 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 PARP2Q9UGN5 583 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 UTYO14607 1347 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 MEIS1O00470 390 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 PIK3CAP42336 1068 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 CCDC51Q96ER9 411 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 FAM84BQ96KN1 310 aaPredicted RBP15.5■□□□□ 0.07
USP3-204ENST00000540797 PDE6CP51160 858 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 SPATA1Q5VX52 437 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms