RNA–Protein interactions for RNA: ENST00000540183.1

SEMA4D-222, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 176 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-222ENST00000540183 NKX2-4Q9H2Z4 354 aa16.82■□□□□ 0.28
SEMA4D-222ENST00000540183 YBX2Q9Y2T7 364 aaKnown RBP16.82■□□□□ 0.28
SEMA4D-222ENST00000540183 MUC3AQ02505 3323 aa16.82■□□□□ 0.28
SEMA4D-222ENST00000540183 TET1Q8NFU7 2136 aa16.82■□□□□ 0.28
SEMA4D-222ENST00000540183 TCF20Q9UGU0 1960 aaKnown RBP16.82■□□□□ 0.28
SEMA4D-222ENST00000540183 KIAA1217Q5T5P2 1943 aa16.82■□□□□ 0.28
SEMA4D-222ENST00000540183 MYH7BA7E2Y1 1941 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 CABYRO75952 493 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 FGAP02671 866 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 FGRP09769 529 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 PDE1AP54750 535 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 ALX1Q15699 326 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 PPP4R3BQ5MIZ7 849 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 BTNL9Q6UXG8 535 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 OTOP2Q7RTS6 562 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 ZNF589Q86UQ0 364 aaPredicted RBP16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 MORC4Q8TE76 937 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 HERVK_113Q902F9 699 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 SCLYQ96I15 445 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 VTA1Q9NP79 307 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 HELLSQ9NRZ9 838 aa16.81■□□□□ 0.28
SEMA4D-222ENST00000540183 PTPDC1A2A3K4 754 aa16.8■□□□□ 0.28
SEMA4D-222ENST00000540183 FGBP02675 491 aa16.8■□□□□ 0.28
SEMA4D-222ENST00000540183 CALML3P27482 149 aa16.8■□□□□ 0.28
SEMA4D-222ENST00000540183 RABGGTBP53611 331 aa16.8■□□□□ 0.28
SEMA4D-222ENST00000540183 RRP1P56182 461 aaKnown RBP16.8■□□□□ 0.28
SEMA4D-222ENST00000540183 NMIQ13287 307 aaPredicted RBP16.8■□□□□ 0.28
SEMA4D-222ENST00000540183 ADGRE1Q14246 886 aa16.8■□□□□ 0.28
SEMA4D-222ENST00000540183 CLEC4DQ8WXI8 215 aa16.8■□□□□ 0.28
SEMA4D-222ENST00000540183 TRMT13Q9NUP7 481 aaKnown RBP16.8■□□□□ 0.28
SEMA4D-222ENST00000540183 RBAK-RBAKDNI3L0D1 243 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 ZEB2O60315 1214 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 HSPD1P10809 573 aaKnown RBP16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 PDHBP11177 359 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 TOP1P11387 765 aaKnown RBP16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 MYOGP15173 224 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 CCDC85BQ15834 202 aaPredicted RBP16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 DUSP28Q4G0W2 176 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 MCMDC2Q4G0Z9 681 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 TBC1D10CQ8IV04 446 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 WDR11Q9BZH6 1224 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 CPVLQ9H3G5 476 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 Q9Y3F1 56 aa16.79■□□□□ 0.28
SEMA4D-222ENST00000540183 MYL3P08590 195 aa16.78■□□□□ 0.28
SEMA4D-222ENST00000540183 CYP2C9P11712 490 aa16.78■□□□□ 0.28
SEMA4D-222ENST00000540183 COPS5Q92905 334 aa16.78■□□□□ 0.28
SEMA4D-222ENST00000540183 GAS2L1Q99501 681 aaPredicted RBP16.78■□□□□ 0.28
SEMA4D-222ENST00000540183 ALDH8A1Q9H2A2 487 aaPredicted RBP16.78■□□□□ 0.28
SEMA4D-222ENST00000540183 GOLGA8HP0CJ92 632 aa16.77■□□□□ 0.28
SEMA4D-222ENST00000540183 OR6J1Q8NGC5 347 aa16.77■□□□□ 0.28
SEMA4D-222ENST00000540183 ZKSCAN3Q9BRR0 538 aa16.77■□□□□ 0.28
SEMA4D-222ENST00000540183 TCP11L1Q9NUJ3 509 aa16.77■□□□□ 0.28
SEMA4D-222ENST00000540183 ADD3Q9UEY8 706 aaKnown RBP16.77■□□□□ 0.28
SEMA4D-222ENST00000540183 ZBTB47Q9UFB7 747 aaPredicted RBP16.77■□□□□ 0.28
SEMA4D-222ENST00000540183 MSRAQ9UJ68 235 aa16.77■□□□□ 0.28
SEMA4D-222ENST00000540183 NEDD4P46934 1319 aa16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 TRANK1O15050 2925 aa16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 RBM47A0AV96 593 aaKnown RBP16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 IGFBP4P22692 258 aa16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 PURAQ00577 322 aaKnown RBP16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 ZNF543Q08ER8 600 aa16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 TTLL4Q14679 1199 aa16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 RAB30Q15771 203 aa16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 TJAP1Q5JTD0 557 aa16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 RNF207Q6ZRF8 634 aa16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 LNPKQ9C0E8 428 aa16.76■□□□□ 0.27
SEMA4D-222ENST00000540183 TNKSO95271 1327 aa16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 CCDC171Q6TFL3 1326 aa16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 ZBBXA8MT70 800 aa16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 RPS6P62753 249 aaKnown RBP16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 NBPF20Q3BBV1 942 aa16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 USH1GQ495M9 461 aa16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 AKNAD1Q5T1N1 836 aa16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 DEFB128Q7Z7B8 93 aa16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 RILPL2Q969X0 211 aa16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 UBA5Q9GZZ9 404 aa16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 PRRC2BQ5JSZ5 2229 aaKnown RBP16.75■□□□□ 0.27
SEMA4D-222ENST00000540183 ZMYM6O95789 1325 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 TRIM6-TRIM34B2RNG4 842 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 ARIH2O95376 493 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 SNHG28P0DPA3 235 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 PDE4DQ08499 809 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 HDAC1Q13547 482 aaPredicted RBP16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 FAM47CQ5HY64 1035 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 MFSD6Q6ZSS7 791 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 TBC1D5Q92609 795 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 SYMPKQ92797 1274 aaKnown RBP16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 MTG1Q9BT17 334 aaPredicted RBP16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 MTIF3Q9H2K0 278 aaKnown RBP16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 SLC28A3Q9HAS3 691 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 POLR3EQ9NVU0 708 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 SLC4A7Q9Y6M7 1214 aa16.74■□□□□ 0.27
SEMA4D-222ENST00000540183 COL4A4P53420 1690 aaPredicted RBP16.73■□□□□ 0.27
SEMA4D-222ENST00000540183 EDNRBP24530 442 aa16.73■□□□□ 0.27
SEMA4D-222ENST00000540183 CPT1AP50416 773 aa16.73■□□□□ 0.27
SEMA4D-222ENST00000540183 B4GALNT3Q6L9W6 998 aa16.73■□□□□ 0.27
SEMA4D-222ENST00000540183 RPUSD2Q8IZ73 545 aaKnown RBP16.73■□□□□ 0.27
SEMA4D-222ENST00000540183 SEZ6LQ9BYH1 1024 aa16.73■□□□□ 0.27
SEMA4D-222ENST00000540183 XIRP2A4UGR9 3374 aa16.73■□□□□ 0.27
SEMA4D-222ENST00000540183 NCOR1O75376 2440 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms