RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 SEPT9Q9UHD8 586 aaPredicted RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 MYPNQ86TC9 1320 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 CALCRLQ16602 461 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 LY6KQ17RY6 165 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 LRCH2Q5VUJ6 765 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 DTHD1Q6ZMT9 781 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 FAM160B2Q86V87 743 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 BANK1Q8NDB2 785 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 PDGFCQ9NRA1 345 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 RNF186Q9NXI6 227 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 PCDHA6Q9UN73 950 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 PCDHA12Q9UN75 941 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 PCDHA8Q9Y5H6 950 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 RIF1Q5UIP0 2472 aaKnown RBP8.18□□□□□ -1.1
MSH6-209ENST00000538136 CRYBG1Q9Y4K1 1723 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 KIF20AO95235 890 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 NR3C2P08235 984 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 NUCB2P80303 420 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 TOB2Q14106 344 aaPredicted RBP8.18□□□□□ -1.1
MSH6-209ENST00000538136 TMEM132BQ14DG7 1078 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 MTFR1Q15390 333 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 KRT79Q5XKE5 535 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 IFNL1Q8IU54 200 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 FAM163AQ96GL9 167 aaPredicted RBP8.18□□□□□ -1.1
MSH6-209ENST00000538136 KCNH4Q9UQ05 1017 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 INPP5FQ9Y2H2 1132 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 PNMA6FA0A0J9YX94 578 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 POTEMA6NI47 508 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 PP2D1A8MPX8 630 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 VWA5AO00534 786 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 CXCL11O14625 94 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 STX17P56962 302 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 STXBP2Q15833 593 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 TTC38Q5R3I4 469 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 SWSAP1Q6NVH7 229 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 MCF2L2Q86YR7 1114 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 IGDCC4Q8TDY8 1250 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 ZBTB10Q96DT7 871 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 ANO3Q9BYT9 981 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 TRIM6Q9C030 488 aaPredicted RBP8.18□□□□□ -1.1
MSH6-209ENST00000538136 FAM13BQ9NYF5 915 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 BTBD7Q9P203 1132 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 DDX25Q9UHL0 483 aaKnown RBP8.18□□□□□ -1.1
MSH6-209ENST00000538136 PPP1R9AQ9ULJ8 1098 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 GABRQQ9UN88 632 aa8.18□□□□□ -1.1
MSH6-209ENST00000538136 ITGB4P16144 1822 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 LRRIQ4A6NIV6 560 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 INO80B-WBP1J3KQ70 363 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 CCL23P55773 120 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 TBC1D8BQ0IIM8 1120 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 TRIM32Q13049 653 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 MTMR1Q13613 665 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 TMTC3Q6ZXV5 915 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 OR6J1Q8NGC5 347 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 NSUN6Q8TEA1 469 aaKnown RBP8.17□□□□□ -1.1
MSH6-209ENST00000538136 GTF3C6Q969F1 213 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 CALML4Q96GE6 196 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 ZNF512BQ96KM6 892 aaPredicted RBP8.17□□□□□ -1.1
MSH6-209ENST00000538136 TEPSINQ96N21 525 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 INO80BQ9C086 356 aaPredicted RBP8.17□□□□□ -1.1
MSH6-209ENST00000538136 NYAP2Q9P242 653 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 LRWD1Q9UFC0 647 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 SPDYE16A6NNV3 312 aaPredicted RBP8.17□□□□□ -1.1
MSH6-209ENST00000538136 RARBP10826 455 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 GJA5P36382 358 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 PPIL2Q13356 520 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 FAM102BQ5T8I3 360 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 GIMAP6Q6P9H5 292 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 CEP57L1Q8IYX8 460 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 MICAL1Q8TDZ2 1067 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 LPAR1Q92633 364 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 CCDC47Q96A33 483 aaKnown RBP8.17□□□□□ -1.1
MSH6-209ENST00000538136 RAB34Q9BZG1 259 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 BLZF1Q9H2G9 400 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 RBM27Q9P2N5 1060 aaKnown RBP8.17□□□□□ -1.1
MSH6-209ENST00000538136 AGTPBP1Q9UPW5 1226 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 MKI67P46013 3256 aaKnown RBP8.17□□□□□ -1.1
MSH6-209ENST00000538136 COL22A1Q8NFW1 1626 aaPredicted RBP8.17□□□□□ -1.1
MSH6-209ENST00000538136 TMEM150BA6NC51 233 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 FOXN1O15353 648 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 ZNF286BP0CG31 522 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 ASIC1P78348 528 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 PTGDRQ13258 359 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 RASAL3Q86YV0 1011 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 NELFCDQ8IXH7 590 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 JMYQ8N9B5 988 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 CNNM3Q8NE01 707 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 TTC14Q96N46 770 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 WDR11Q9BZH6 1224 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 RGL1Q9NZL6 768 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 USP20Q9Y2K6 914 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 PTCH2Q9Y6C5 1203 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 LTBP3Q9NS15 1303 aa8.17□□□□□ -1.1
MSH6-209ENST00000538136 COL1A1P02452 1464 aaPredicted RBP8.17□□□□□ -1.1
MSH6-209ENST00000538136 GRK4P32298 578 aa8.16□□□□□ -1.1
MSH6-209ENST00000538136 COPB2P35606 906 aa8.16□□□□□ -1.1
MSH6-209ENST00000538136 SBK1Q52WX2 424 aa8.16□□□□□ -1.1
MSH6-209ENST00000538136 L3MBTL3Q96JM7 780 aaPredicted RBP8.16□□□□□ -1.1
MSH6-209ENST00000538136 TTC12Q9H892 705 aaPredicted RBP8.16□□□□□ -1.1
MSH6-209ENST00000538136 A1CFQ9NQ94 594 aaKnown RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms