RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 SLC44A5Q8NCS7 719 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 NGLY1Q96IV0 654 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 CAPZA3Q96KX2 299 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 NUP58Q9BVL2 599 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 BARHL2Q9NY43 387 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 ANO9A1A5B4 782 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 CYTH3O43739 400 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 VPS72Q15906 364 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 MAP9Q49MG5 647 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 LRRC31Q6UY01 552 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 AMIGO3Q86WK7 504 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 MAPKAPK5Q8IW41 473 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 COG1Q8WTW3 980 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 TMEM47Q9BQJ4 181 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 SAP30BPQ9UHR5 308 aaKnown RBP12.89□□□□□ -0.35
SYNE1-234ENST00000536990 STXBP3O00186 592 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 CCNE1P24864 410 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 RFC4P35249 363 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 PRPHP41219 470 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 CDK17Q00537 523 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 NFIXQ14938 502 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 MIIPQ5JXC2 388 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 P2RX5Q93086 422 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 C8orf37Q96NL8 207 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 RASSF4Q9H2L5 321 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 ZNF287Q9HBT7 754 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 DUSP10Q9Y6W6 482 aa12.89□□□□□ -0.35
SYNE1-234ENST00000536990 PALM3A6NDB9 673 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-234ENST00000536990 ZNF185O15231 689 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 TRIM21P19474 475 aaKnown RBP12.88□□□□□ -0.35
SYNE1-234ENST00000536990 TBC1D8BQ0IIM8 1120 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 ANKRD40Q6AI12 368 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 SLC51AQ86UW1 340 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 CNOT6LQ96LI5 555 aaKnown RBP12.88□□□□□ -0.35
SYNE1-234ENST00000536990 LZTS2Q9BRK4 669 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 LAD1O00515 517 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 ZNF263O14978 683 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 MYBL2P10244 700 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 RASA1P20936 1047 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 TNNT3P45378 269 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-234ENST00000536990 ZSCAN29Q8IWY8 852 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-234ENST00000536990 C10orf67Q8IYJ2 551 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 EEF2KMTQ96G04 330 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 ZNHIT6Q9NWK9 470 aaKnown RBP12.88□□□□□ -0.35
SYNE1-234ENST00000536990 BTAF1O14981 1849 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 A0A1W2PQJ5 194 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 KLRF2D3W0D1 207 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 NKRFO15226 690 aaKnown RBP eCLIP12.88□□□□□ -0.35
SYNE1-234ENST00000536990 ZMYND10O75800 440 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 GOLGA8HP0CJ92 632 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 PLCG1P19174 1290 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 CYP27A1Q02318 531 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 FIGNQ5HY92 759 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 CCNI2Q6ZMN8 369 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-234ENST00000536990 GPR101Q96P66 508 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-234ENST00000536990 ERGIC2Q96RQ1 377 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 TRIM34Q9BYJ4 488 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 TRIM9Q9C026 710 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 CUEDC2Q9H467 287 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 MAGEF1Q9HAY2 307 aa12.88□□□□□ -0.35
SYNE1-234ENST00000536990 NAV1Q8NEY1 1877 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 SBF2Q86WG5 1849 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 VAV2P52735 878 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 STK4Q13043 487 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 TRAPPC3LQ5T215 181 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 AFAP1L1Q8TED9 768 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 TNRC6CQ9HCJ0 1690 aaKnown RBP12.87□□□□□ -0.35
SYNE1-234ENST00000536990 BICDL2A1A5D9 508 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 NAPAP54920 295 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 CNBD1Q8NA66 436 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 C7orf25Q9BPX7 421 aa12.87□□□□□ -0.35
SYNE1-234ENST00000536990 RTFDC1Q9BY42 306 aaPredicted RBP12.87□□□□□ -0.35
SYNE1-234ENST00000536990 AGPSO00116 658 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 IDEP14735 1019 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 BTDP43251 543 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 PDE4DQ08499 809 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 TXNRD1Q16881 649 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 CABP7Q86V35 215 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 CERS3Q8IU89 383 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 GSPT2Q8IYD1 628 aaKnown RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 RIN2Q8WYP3 895 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 EYA3Q99504 573 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 MACROD2A1Z1Q3 448 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 IPO7O95373 1038 aaKnown RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 FCER1AP12319 257 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 HNRNPH3P31942 346 aaKnown RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 CDK8P49336 464 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 FAM182BQ5T319 152 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 CREG2Q8IUH2 290 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 FAM114A1Q8IWE2 563 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 FNBP4Q8N3X1 1017 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 CAGE1Q8TC20 777 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 AK8Q96MA6 479 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 GDAP1L1Q96MZ0 367 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 NOC4LQ9BVI4 516 aaKnown RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 SELENOOQ9BVL4 669 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 SPZ1Q9BXG8 430 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 ZMYND12Q9H0C1 365 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 CPVLQ9H3G5 476 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 PLEKP08567 350 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms