RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CDK7P50613 346 aa15.37■□□□□ 0.05
RTN3-207ENST00000536011 ALDH5A1P51649 535 aaPredicted RBP15.37■□□□□ 0.05
RTN3-207ENST00000536011 PPIGQ13427 754 aaKnown RBP eCLIP15.37■□□□□ 0.05
RTN3-207ENST00000536011 ASPRV1Q53RT3 343 aa15.37■□□□□ 0.05
RTN3-207ENST00000536011 RNF207Q6ZRF8 634 aa15.37■□□□□ 0.05
RTN3-207ENST00000536011 KIAA1211Q6ZU35 1233 aa15.37■□□□□ 0.05
RTN3-207ENST00000536011 UBAC1Q9BSL1 405 aa15.37■□□□□ 0.05
RTN3-207ENST00000536011 RAD50Q92878 1312 aa15.37■□□□□ 0.05
RTN3-207ENST00000536011 TMEM265A0A087WTH1 108 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 CTAGE5O15320 804 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 DYNC1LI2O43237 492 aaPredicted RBP15.36■□□□□ 0.05
RTN3-207ENST00000536011 SMPD1P17405 629 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 ITGB8P26012 769 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 CALML3P27482 149 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 BEX3Q00994 111 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 PDE4DQ08499 809 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 DUSP28Q4G0W2 176 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 BRDTQ58F21 947 aaPredicted RBP15.36■□□□□ 0.05
RTN3-207ENST00000536011 MFSD5Q6N075 450 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 TAPT1Q6NXT6 567 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 EEPD1Q7L9B9 569 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 FAM126BQ8IXS8 530 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 TMEM199Q8N511 208 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 DNERQ8NFT8 737 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 ZSCAN10Q96SZ4 725 aaPredicted RBP15.36■□□□□ 0.05
RTN3-207ENST00000536011 ZKSCAN3Q9BRR0 538 aa15.36■□□□□ 0.05
RTN3-207ENST00000536011 B4E1Z4 1266 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 CPT1AP50416 773 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 IRX5P78411 483 aaPredicted RBP15.35■□□□□ 0.05
RTN3-207ENST00000536011 CXCL17Q6UXB2 119 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 SLC30A10Q6XR72 485 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 RGS22Q8NE09 1264 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 RUFY2Q8WXA3 655 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 CLEC4DQ8WXI8 215 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 ANKS1AQ92625 1134 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 WDR11Q9BZH6 1224 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 POLR3EQ9NVU0 708 aa15.35■□□□□ 0.05
RTN3-207ENST00000536011 NKRFO15226 690 aaKnown RBP eCLIP15.34■□□□□ 0.05
RTN3-207ENST00000536011 RPS6P62753 249 aaKnown RBP15.34■□□□□ 0.05
RTN3-207ENST00000536011 TRDNQ13061 729 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 ITGA7Q13683 1181 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 USH1GQ495M9 461 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 PSRC1Q6PGN9 363 aaPredicted RBP15.34■□□□□ 0.05
RTN3-207ENST00000536011 ENAHQ8N8S7 591 aaPredicted RBP15.34■□□□□ 0.05
RTN3-207ENST00000536011 SLC43A3Q8NBI5 491 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 SCFD2Q8WU76 684 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 PDGFCQ9NRA1 345 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 SUPT16HQ9Y5B9 1047 aaKnown RBP15.34■□□□□ 0.05
RTN3-207ENST00000536011 LCTP09848 1927 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 TNKSO95271 1327 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 ABCB11O95342 1321 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 UNC80Q8N2C7 3258 aa15.34■□□□□ 0.05
RTN3-207ENST00000536011 CDH23Q9H251 3354 aa15.33■□□□□ 0.05
RTN3-207ENST00000536011 RBM47A0AV96 593 aaKnown RBP15.33■□□□□ 0.04
RTN3-207ENST00000536011 DHX16O60231 1041 aaKnown RBP15.33■□□□□ 0.04
RTN3-207ENST00000536011 CD4P01730 458 aa15.33■□□□□ 0.04
RTN3-207ENST00000536011 PARP1P09874 1014 aaKnown RBP15.33■□□□□ 0.04
RTN3-207ENST00000536011 GOLGA8HP0CJ92 632 aa15.33■□□□□ 0.04
RTN3-207ENST00000536011 EPHB4P54760 987 aa15.33■□□□□ 0.04
RTN3-207ENST00000536011 PPP2R5BQ15173 497 aa15.33■□□□□ 0.04
RTN3-207ENST00000536011 CDC37Q16543 378 aaPredicted RBP15.33■□□□□ 0.04
RTN3-207ENST00000536011 IFIT1BQ5T764 474 aaKnown RBP15.33■□□□□ 0.04
RTN3-207ENST00000536011 TTC22Q5TAA0 569 aa15.33■□□□□ 0.04
RTN3-207ENST00000536011 MCF2L2Q86YR7 1114 aa15.33■□□□□ 0.04
RTN3-207ENST00000536011 FAM161BQ96MY7 647 aa15.33■□□□□ 0.04
RTN3-207ENST00000536011 GUCD1Q96NT3 240 aa15.33■□□□□ 0.04
RTN3-207ENST00000536011 PURBQ96QR8 312 aaKnown RBP15.33■□□□□ 0.04
RTN3-207ENST00000536011 MTIF3Q9H2K0 278 aaKnown RBP15.33■□□□□ 0.04
RTN3-207ENST00000536011 GPHNQ9NQX3 736 aaPredicted RBP15.33■□□□□ 0.04
RTN3-207ENST00000536011 ZSWIM5Q9P217 1185 aa15.33■□□□□ 0.04
RTN3-207ENST00000536011 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.32■□□□□ 0.04
RTN3-207ENST00000536011 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.32■□□□□ 0.04
RTN3-207ENST00000536011 KPNA6O60684 536 aa15.32■□□□□ 0.04
RTN3-207ENST00000536011 EDNRBP24530 442 aa15.32■□□□□ 0.04
RTN3-207ENST00000536011 OR6J1Q8NGC5 347 aa15.32■□□□□ 0.04
RTN3-207ENST00000536011 PPP1R12CQ9BZL4 782 aa15.32■□□□□ 0.04
RTN3-207ENST00000536011 UBA5Q9GZZ9 404 aa15.32■□□□□ 0.04
RTN3-207ENST00000536011 HIPK3Q9H422 1215 aa15.32■□□□□ 0.04
RTN3-207ENST00000536011 DDX49Q9Y6V7 483 aaKnown RBP15.32■□□□□ 0.04
RTN3-207ENST00000536011 SUPT20HL2P0C7V6 817 aa15.31■□□□□ 0.04
RTN3-207ENST00000536011 TRAF1Q13077 416 aa15.31■□□□□ 0.04
RTN3-207ENST00000536011 TTLL4Q14679 1199 aa15.31■□□□□ 0.04
RTN3-207ENST00000536011 ADGRF4Q8IZF3 695 aa15.31■□□□□ 0.04
RTN3-207ENST00000536011 SEMA6BQ9H3T3 888 aa15.31■□□□□ 0.04
RTN3-207ENST00000536011 MRPL11Q9Y3B7 192 aaKnown RBP15.31■□□□□ 0.04
RTN3-207ENST00000536011 ERICH2A1L162 156 aa15.3■□□□□ 0.04
RTN3-207ENST00000536011 CSF2RAP15509 400 aa15.3■□□□□ 0.04
RTN3-207ENST00000536011 SART3Q15020 963 aaKnown RBP15.3■□□□□ 0.04
RTN3-207ENST00000536011 FBXO11Q86XK2 927 aa15.3■□□□□ 0.04
RTN3-207ENST00000536011 NSUN6Q8TEA1 469 aaKnown RBP15.3■□□□□ 0.04
RTN3-207ENST00000536011 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.3■□□□□ 0.04
RTN3-207ENST00000536011 MTG1Q9BT17 334 aaPredicted RBP15.3■□□□□ 0.04
RTN3-207ENST00000536011 MYL3P08590 195 aa15.29■□□□□ 0.04
RTN3-207ENST00000536011 TXNP10599 105 aaKnown RBP15.29■□□□□ 0.04
RTN3-207ENST00000536011 GSPT1P15170 499 aaKnown RBP15.29■□□□□ 0.04
RTN3-207ENST00000536011 DNAJB2P25686 324 aa15.29■□□□□ 0.04
RTN3-207ENST00000536011 PDE4AP27815 886 aa15.29■□□□□ 0.04
RTN3-207ENST00000536011 CYP2C18P33260 490 aa15.29■□□□□ 0.04
RTN3-207ENST00000536011 PURAQ00577 322 aaKnown RBP15.29■□□□□ 0.04
RTN3-207ENST00000536011 QRICH1Q2TAL8 776 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms