RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 SCN5AQ14524 2016 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 FAM186AA6NE01 2351 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 DNAJC25-GNG10A0A024R161 153 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 TMEM221A6NGB7 291 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 M0R296 226 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 WDR46O15213 610 aaKnown RBP7.87□□□□□ -1.15
CD44-237ENST00000534082 BAIAP3O94812 1187 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 RFC2P35250 354 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 STAT3P40763 770 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 USP5P45974 858 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 ID4P47928 161 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 KCNJ6P48051 423 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 PSMC6P62333 389 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 FSCN1Q16658 493 aaKnown RBP7.87□□□□□ -1.15
CD44-237ENST00000534082 ASCL5Q7RTU5 278 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 TMCO2Q7Z6W1 182 aaPredicted RBP7.87□□□□□ -1.15
CD44-237ENST00000534082 TTC6Q86TZ1 520 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 TLK2Q86UE8 772 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 EDAQ92838 391 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 PBXIP1Q96AQ6 731 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 DDX11Q96FC9 970 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 TGS1Q96RS0 853 aaKnown RBP7.87□□□□□ -1.15
CD44-237ENST00000534082 POP1Q99575 1024 aaKnown RBP7.87□□□□□ -1.15
CD44-237ENST00000534082 FTOQ9C0B1 505 aaKnown RBP eCLIP7.87□□□□□ -1.15
CD44-237ENST00000534082 ALDH8A1Q9H2A2 487 aaPredicted RBP7.87□□□□□ -1.15
CD44-237ENST00000534082 ALG13Q9NP73 1137 aaKnown RBP7.87□□□□□ -1.15
CD44-237ENST00000534082 COPRSQ9NQ92 184 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 TRMT13Q9NUP7 481 aaKnown RBP7.87□□□□□ -1.15
CD44-237ENST00000534082 FBXO28Q9NVF7 368 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 PLXNA3P51805 1871 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 NCOR2Q9Y618 2525 aa7.87□□□□□ -1.15
CD44-237ENST00000534082 PTPRSQ13332 1948 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 TNKSO95271 1327 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.86□□□□□ -1.15
CD44-237ENST00000534082 VWA5AO00534 786 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 UQCRFS1P1P0C7P4 283 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 UBTFL1P0CB47 393 aaPredicted RBP7.86□□□□□ -1.15
CD44-237ENST00000534082 PLCD1P51178 756 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 ERVK-21P61565 698 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 TIGD5Q53EQ6 642 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 TRIM67Q6ZTA4 783 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 EP400NLQ6ZTU2 488 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 NOL8Q76FK4 1167 aaKnown RBP7.86□□□□□ -1.15
CD44-237ENST00000534082 ARMCX2Q7L311 632 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 RNF135Q8IUD6 432 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 CLEC10AQ8IUN9 316 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 FBXL6Q8N531 539 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 MAGEB6Q8N7X4 407 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 REPS2Q8NFH8 660 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 PABPC5Q96DU9 382 aaKnown RBP7.86□□□□□ -1.15
CD44-237ENST00000534082 FGD4Q96M96 766 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 KATNBL1Q9H079 304 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 IRF2BPLQ9H1B7 796 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 SH2D4AQ9H788 454 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 VCPKMTQ9H867 229 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 ARHGEF10LQ9HCE6 1279 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 SNRKQ9NRH2 765 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 ADAMTS5Q9UNA0 930 aa7.86□□□□□ -1.15
CD44-237ENST00000534082 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.86□□□□□ -1.15
CD44-237ENST00000534082 SIP14410 1827 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 PTPRCP08575 1304 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 LINC01553A4QN01 128 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 PRR23AA6NEV1 266 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 PROB1E7EW31 1015 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 ZEB2O60315 1214 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 RGS20O76081 388 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 SUPT20HL2P0C7V6 817 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 PTGS1P23219 599 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 VCPP55072 806 aaKnown RBP7.85□□□□□ -1.15
CD44-237ENST00000534082 WDR5P61964 334 aaKnown RBP7.85□□□□□ -1.15
CD44-237ENST00000534082 DEFB103AP81534 67 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 TNFAIP2Q03169 654 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 GABPAQ06546 454 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 SNRNP48Q6IEG0 339 aaKnown RBP7.85□□□□□ -1.15
CD44-237ENST00000534082 TMEM179Q6ZVK1 233 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 WDR63Q8IWG1 891 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 MIGA1Q8NAN2 632 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 MRPL38Q96DV4 380 aaKnown RBP7.85□□□□□ -1.15
CD44-237ENST00000534082 TEX13BQ9BXU2 312 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 AP5M1Q9H0R1 490 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 PPP1R9AQ9ULJ8 1098 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 TMX2Q9Y320 296 aa7.85□□□□□ -1.15
CD44-237ENST00000534082 DMXL1Q9Y485 3027 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 MCM3APO60318 1980 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 CFAP47Q6ZTR5 3102 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 MED19A0JLT2 244 aaPredicted RBP7.84□□□□□ -1.15
CD44-237ENST00000534082 IQCF3P0C7M6 154 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 CYP7A1P22680 504 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 KCNC4Q03721 635 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 ICA1Q05084 483 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 COL19A1Q14993 1142 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 SMAD2Q15796 467 aaKnown RBP7.84□□□□□ -1.15
CD44-237ENST00000534082 PTPROQ16827 1216 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 TCEAL5Q5H9L2 206 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 CERS3Q8IU89 383 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 CCDC144CPQ8IYA2 1237 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 BANK1Q8NDB2 785 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.84□□□□□ -1.15
CD44-237ENST00000534082 CRBNQ96SW2 442 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 RAD9AQ99638 391 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms