RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 HMGCRP04035 888 aa16.71■□□□□ 0.27
CPSF1-206ENST00000531480 RPS6P62753 249 aaKnown RBP16.71■□□□□ 0.27
CPSF1-206ENST00000531480 ST3GAL1Q11201 340 aa16.71■□□□□ 0.27
CPSF1-206ENST00000531480 BAATQ14032 418 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-206ENST00000531480 CCL14Q16627 93 aa16.71■□□□□ 0.27
CPSF1-206ENST00000531480 RNF207Q6ZRF8 634 aa16.71■□□□□ 0.27
CPSF1-206ENST00000531480 MORC4Q8TE76 937 aa16.71■□□□□ 0.27
CPSF1-206ENST00000531480 DDX11Q96FC9 970 aa16.71■□□□□ 0.27
CPSF1-206ENST00000531480 ZNF333Q96JL9 665 aa16.71■□□□□ 0.27
CPSF1-206ENST00000531480 ZSCAN31Q96LW9 406 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-206ENST00000531480 hCG_1642624A0A1W2PR95 340 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 SOWAHBA6NEL2 793 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 PIK3CDO00329 1044 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 ST18O60284 1047 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 SCG2P13521 617 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 ELNP15502 786 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 CNTN2Q02246 1040 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 STK3Q13188 491 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 SLC9C1Q4G0N8 1177 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 WWC2Q6AWC2 1192 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 TYW1BQ6NUM6 668 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 PPP1R18Q6NYC8 613 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 NSMFQ6X4W1 530 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 SLC30A10Q6XR72 485 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 TBC1D5Q92609 795 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 PHKBQ93100 1093 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 SH2B1Q9NRF2 756 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-206ENST00000531480 BARHL2Q9NY43 387 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 BRCA2P51587 3418 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 SYNGAP1Q96PV0 1343 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 STK36Q9NRP7 1315 aa16.7■□□□□ 0.26
CPSF1-206ENST00000531480 POTEB2H3BUK9 544 aa16.69■□□□□ 0.26
CPSF1-206ENST00000531480 STXBP3O00186 592 aa16.69■□□□□ 0.26
CPSF1-206ENST00000531480 CD2BP2O95400 341 aaKnown RBP16.69■□□□□ 0.26
CPSF1-206ENST00000531480 MCM2P49736 904 aa16.69■□□□□ 0.26
CPSF1-206ENST00000531480 CPLX2Q6PUV4 134 aaKnown RBP16.69■□□□□ 0.26
CPSF1-206ENST00000531480 FAM177A1Q8N128 213 aaPredicted RBP16.69■□□□□ 0.26
CPSF1-206ENST00000531480 DNERQ8NFT8 737 aa16.69■□□□□ 0.26
CPSF1-206ENST00000531480 SYTL5Q8TDW5 730 aaPredicted RBP16.69■□□□□ 0.26
CPSF1-206ENST00000531480 PIBF1Q8WXW3 757 aa16.69■□□□□ 0.26
CPSF1-206ENST00000531480 TINF2Q9BSI4 451 aa16.69■□□□□ 0.26
CPSF1-206ENST00000531480 NRBP1Q9UHY1 535 aa16.69■□□□□ 0.26
CPSF1-206ENST00000531480 ESYT2A0FGR8 921 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 PTPDC1A2A3K4 754 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 MEIS2O14770 477 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 CPLX1O14810 134 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 CDKL5O76039 1030 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 INHAP05111 366 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 EDNRBP24530 442 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 SH3TC2Q8TF17 1288 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 GPKOWQ92917 476 aaPredicted RBP eCLIP16.68■□□□□ 0.26
CPSF1-206ENST00000531480 COL20A1Q9P218 1284 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 FRMPD4Q14CM0 1322 aa16.68■□□□□ 0.26
CPSF1-206ENST00000531480 DEXIO95424 95 aa16.67■□□□□ 0.26
CPSF1-206ENST00000531480 CACNB2Q08289 660 aaPredicted RBP16.67■□□□□ 0.26
CPSF1-206ENST00000531480 SSRP1Q08945 709 aaKnown RBP16.67■□□□□ 0.26
CPSF1-206ENST00000531480 TRIM32Q13049 653 aa16.67■□□□□ 0.26
CPSF1-206ENST00000531480 NOL8Q76FK4 1167 aaKnown RBP16.67■□□□□ 0.26
CPSF1-206ENST00000531480 HEATR3Q7Z4Q2 680 aa16.67■□□□□ 0.26
CPSF1-206ENST00000531480 TRIM22Q8IYM9 498 aa16.67■□□□□ 0.26
CPSF1-206ENST00000531480 NECAB1Q8N987 351 aa16.67■□□□□ 0.26
CPSF1-206ENST00000531480 NSUN7Q8NE18 718 aaKnown RBP16.67■□□□□ 0.26
CPSF1-206ENST00000531480 SHISA4Q96DD7 197 aa16.67■□□□□ 0.26
CPSF1-206ENST00000531480 SLC26A6Q9BXS9 759 aa16.67■□□□□ 0.26
CPSF1-206ENST00000531480 SH3GLB2Q9NR46 395 aa16.67■□□□□ 0.26
CPSF1-206ENST00000531480 ADD3Q9UEY8 706 aaKnown RBP16.67■□□□□ 0.26
CPSF1-206ENST00000531480 FRMPD3Q5JV73 1810 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 ASB14A6NK59 587 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 GCOM1H8Y6P7 765 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-206ENST00000531480 SNAI1O95863 264 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-206ENST00000531480 CFBP00751 764 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 POLR2MP0CAP2 368 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 CYBAP13498 195 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 FDPSP14324 419 aaKnown RBP16.66■□□□□ 0.26
CPSF1-206ENST00000531480 ALDH5A1P51649 535 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-206ENST00000531480 UBXN2AP68543 259 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 MFSD14CQ5VZR4 134 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 SMARCC2Q8TAQ2 1214 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 PURBQ96QR8 312 aaKnown RBP16.66■□□□□ 0.26
CPSF1-206ENST00000531480 LLPHQ9BRT6 129 aaKnown RBP16.66■□□□□ 0.26
CPSF1-206ENST00000531480 KATNBL1Q9H079 304 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 ZMYND12Q9H0C1 365 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 PSTPIP2Q9H939 334 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 RIC8AQ9NPQ8 531 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 PAK6Q9NQU5 681 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-206ENST00000531480 RPTORQ8N122 1335 aa16.66■□□□□ 0.26
CPSF1-206ENST00000531480 KIAA1217Q5T5P2 1943 aa16.65■□□□□ 0.26
CPSF1-206ENST00000531480 PRKAR2AP13861 404 aaKnown RBP16.65■□□□□ 0.26
CPSF1-206ENST00000531480 CALML3P27482 149 aa16.65■□□□□ 0.26
CPSF1-206ENST00000531480 CYP2C19P33261 490 aa16.65■□□□□ 0.26
CPSF1-206ENST00000531480 CLK2P49760 499 aaKnown RBP16.65■□□□□ 0.26
CPSF1-206ENST00000531480 AKAP17AQ02040 695 aaKnown RBP16.65■□□□□ 0.26
CPSF1-206ENST00000531480 ARMCX2Q7L311 632 aa16.65■□□□□ 0.26
CPSF1-206ENST00000531480 TMX3Q96JJ7 454 aa16.65■□□□□ 0.26
CPSF1-206ENST00000531480 TAAR1Q96RJ0 339 aa16.65■□□□□ 0.26
CPSF1-206ENST00000531480 GLT8D2Q9H1C3 349 aa16.65■□□□□ 0.26
CPSF1-206ENST00000531480 PDE4DIPQ5VU43 2346 aa16.65■□□□□ 0.26
CPSF1-206ENST00000531480 ZNF865P0CJ78 1059 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-206ENST00000531480 NAPAP54920 295 aa16.64■□□□□ 0.25
CPSF1-206ENST00000531480 TRPV1Q8NER1 839 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms