RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 COA7Q96BR5 231 aa24.18■■□□□ 1.46
VPS28-212ENST00000530836 PRR12Q9ULL5 1215 aa24.18■■□□□ 1.46
VPS28-212ENST00000530836 PCDHB6Q9Y5E3 794 aa24.18■■□□□ 1.46
VPS28-212ENST00000530836 FOXN1O15353 648 aa24.17■■□□□ 1.46
VPS28-212ENST00000530836 TLR2O60603 784 aa24.17■■□□□ 1.46
VPS28-212ENST00000530836 CUTAO60888 179 aa24.17■■□□□ 1.46
VPS28-212ENST00000530836 IRX3P78415 501 aaPredicted RBP24.17■■□□□ 1.46
VPS28-212ENST00000530836 EARS2Q5JPH6 523 aaKnown RBP24.17■■□□□ 1.46
VPS28-212ENST00000530836 CCAR1Q8IX12 1150 aaKnown RBP24.17■■□□□ 1.46
VPS28-212ENST00000530836 MRPS27Q92552 414 aaKnown RBP24.17■■□□□ 1.46
VPS28-212ENST00000530836 CUL5Q93034 780 aa24.17■■□□□ 1.46
VPS28-212ENST00000530836 PCDHA1Q9Y5I3 950 aa24.17■■□□□ 1.46
VPS28-212ENST00000530836 PPP1R11O60927 126 aaPredicted RBP24.17■■□□□ 1.46
VPS28-212ENST00000530836 FBXO11Q86XK2 927 aa24.17■■□□□ 1.46
VPS28-212ENST00000530836 KRI1Q8N9T8 703 aaKnown RBP24.17■■□□□ 1.46
VPS28-212ENST00000530836 P2RX7Q99572 595 aaKnown RBP24.17■■□□□ 1.46
VPS28-212ENST00000530836 TSKSQ9UJT2 592 aa24.17■■□□□ 1.46
VPS28-212ENST00000530836 LOC285556D6RIA3 1793 aa24.16■■□□□ 1.46
VPS28-212ENST00000530836 CMA1P23946 247 aa24.16■■□□□ 1.46
VPS28-212ENST00000530836 NONOQ15233 471 aaKnown RBP eCLIP24.16■■□□□ 1.46
VPS28-212ENST00000530836 FAM205CA6NFA0 338 aa24.15■■□□□ 1.46
VPS28-212ENST00000530836 LIG1P18858 919 aa24.15■■□□□ 1.46
VPS28-212ENST00000530836 ORC2Q13416 577 aaPredicted RBP24.15■■□□□ 1.46
VPS28-212ENST00000530836 TPRNQ4KMQ1 711 aa24.15■■□□□ 1.46
VPS28-212ENST00000530836 AXDND1Q5T1B0 1012 aaPredicted RBP24.15■■□□□ 1.46
VPS28-212ENST00000530836 ZNF579Q8NAF0 562 aaKnown RBP24.15■■□□□ 1.46
VPS28-212ENST00000530836 TANGO6Q9C0B7 1094 aa24.15■■□□□ 1.46
VPS28-212ENST00000530836 PSTPIP2Q9H939 334 aa24.15■■□□□ 1.46
VPS28-212ENST00000530836 ADGRA2Q96PE1 1338 aa24.15■■□□□ 1.46
VPS28-212ENST00000530836 ATP2B1P20020 1258 aa24.14■■□□□ 1.46
VPS28-212ENST00000530836 PTPREP23469 700 aa24.14■■□□□ 1.46
VPS28-212ENST00000530836 MARCKSP29966 332 aaPredicted RBP24.14■■□□□ 1.46
VPS28-212ENST00000530836 CTCFP49711 727 aaPredicted RBP24.14■■□□□ 1.46
VPS28-212ENST00000530836 FAM160A1Q05DH4 1040 aa24.14■■□□□ 1.46
VPS28-212ENST00000530836 COG2Q14746 738 aa24.14■■□□□ 1.46
VPS28-212ENST00000530836 NOM1Q5C9Z4 860 aaKnown RBP24.14■■□□□ 1.46
VPS28-212ENST00000530836 SMCR8Q8TEV9 937 aaPredicted RBP24.14■■□□□ 1.46
VPS28-212ENST00000530836 DACT1Q9NYF0 836 aa24.14■■□□□ 1.46
VPS28-212ENST00000530836 SRPRBQ9Y5M8 271 aaKnown RBP24.14■■□□□ 1.46
VPS28-212ENST00000530836 C17orf99Q6UX52 265 aa24.13■■□□□ 1.45
VPS28-212ENST00000530836 FSIP1Q8NA03 581 aa24.13■■□□□ 1.45
VPS28-212ENST00000530836 FERMT2Q96AC1 680 aa24.13■■□□□ 1.45
VPS28-212ENST00000530836 RANBP17Q9H2T7 1088 aaKnown RBP24.13■■□□□ 1.45
VPS28-212ENST00000530836 HOXC10Q9NYD6 342 aa24.13■■□□□ 1.45
VPS28-212ENST00000530836 GPR25O00155 361 aa24.13■■□□□ 1.45
VPS28-212ENST00000530836 HSPA8P11142 646 aaKnown RBP24.13■■□□□ 1.45
VPS28-212ENST00000530836 HERVK_113P62684 666 aa24.13■■□□□ 1.45
VPS28-212ENST00000530836 PRPF38AQ8NAV1 312 aaKnown RBP24.13■■□□□ 1.45
VPS28-212ENST00000530836 RASGRP4Q8TDF6 673 aa24.13■■□□□ 1.45
VPS28-212ENST00000530836 NUP62CLQ9H1M0 184 aa24.13■■□□□ 1.45
VPS28-212ENST00000530836 PNMA2Q9UL42 364 aa24.13■■□□□ 1.45
VPS28-212ENST00000530836 LAD1O00515 517 aa24.12■■□□□ 1.45
VPS28-212ENST00000530836 FLOT1O75955 427 aa24.12■■□□□ 1.45
VPS28-212ENST00000530836 FDX1P10109 184 aa24.12■■□□□ 1.45
VPS28-212ENST00000530836 GCLCP48506 637 aaPredicted RBP24.12■■□□□ 1.45
VPS28-212ENST00000530836 CLK2P49760 499 aaKnown RBP24.12■■□□□ 1.45
VPS28-212ENST00000530836 ATP2C1P98194 919 aaPredicted RBP24.12■■□□□ 1.45
VPS28-212ENST00000530836 KIFC2Q96AC6 838 aa24.12■■□□□ 1.45
VPS28-212ENST00000530836 CPA4Q9UI42 421 aa24.12■■□□□ 1.45
VPS28-212ENST00000530836 FAM237AA0A1B0GTK4 181 aa24.11■■□□□ 1.45
VPS28-212ENST00000530836 ADAMTS3O15072 1205 aa24.11■■□□□ 1.45
VPS28-212ENST00000530836 NR1I2O75469 434 aa24.11■■□□□ 1.45
VPS28-212ENST00000530836 ZNF174Q15697 407 aa24.11■■□□□ 1.45
VPS28-212ENST00000530836 ARL6IP4Q66PJ3 421 aaKnown RBP24.11■■□□□ 1.45
VPS28-212ENST00000530836 LBX2Q6XYB7 198 aa24.11■■□□□ 1.45
VPS28-212ENST00000530836 NEK8Q86SG6 692 aa24.11■■□□□ 1.45
VPS28-212ENST00000530836 ENGASEQ8NFI3 743 aa24.11■■□□□ 1.45
VPS28-212ENST00000530836 GTF3C2Q8WUA4 911 aaPredicted RBP24.11■■□□□ 1.45
VPS28-212ENST00000530836 BIN2Q9UBW5 565 aaPredicted RBP24.11■■□□□ 1.45
VPS28-212ENST00000530836 FBXO2Q9UK22 296 aaPredicted RBP24.11■■□□□ 1.45
VPS28-212ENST00000530836 CTAGE5O15320 804 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 KINO60870 393 aaKnown RBP24.1■■□□□ 1.45
VPS28-212ENST00000530836 BCRP11274 1271 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 DSG3P32926 999 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 INF2Q27J81 1249 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 SLF1Q9BQI6 1058 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 CLSTN2Q9H4D0 955 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 FBXO28Q9NVF7 368 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 MYPNQ86TC9 1320 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 SPDYE16A6NNV3 312 aaPredicted RBP24.1■■□□□ 1.45
VPS28-212ENST00000530836 LBX1P52954 281 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 AP3B2Q13367 1082 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 RESP18Q5W5W9 173 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 POTEEQ6S8J3 1075 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 LRSAM1Q6UWE0 723 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 NAP1L4Q99733 375 aaKnown RBP24.1■■□□□ 1.45
VPS28-212ENST00000530836 GOLPH3LQ9H4A5 285 aa24.1■■□□□ 1.45
VPS28-212ENST00000530836 SYCE3A1L190 88 aa24.09■■□□□ 1.45
VPS28-212ENST00000530836 PTGDRQ13258 359 aa24.09■■□□□ 1.45
VPS28-212ENST00000530836 SNW1Q13573 536 aaKnown RBP24.09■■□□□ 1.45
VPS28-212ENST00000530836 JAKMIP3Q5VZ66 844 aa24.09■■□□□ 1.45
VPS28-212ENST00000530836 FMR1NBQ8N0W7 255 aaPredicted RBP24.09■■□□□ 1.45
VPS28-212ENST00000530836 ANKRD13CQ8N6S4 541 aa24.09■■□□□ 1.45
VPS28-212ENST00000530836 TBCKQ8TEA7 893 aa24.09■■□□□ 1.45
VPS28-212ENST00000530836 FAM13BQ9NYF5 915 aa24.09■■□□□ 1.45
VPS28-212ENST00000530836 RBPJLQ9UBG7 517 aa24.09■■□□□ 1.45
VPS28-212ENST00000530836 PPP1R9AQ9ULJ8 1098 aa24.09■■□□□ 1.45
VPS28-212ENST00000530836 ADAMTS5Q9UNA0 930 aa24.09■■□□□ 1.45
VPS28-212ENST00000530836 GOLGA6L3A6NEY3 463 aa24.08■■□□□ 1.45
VPS28-212ENST00000530836 FOSP01100 380 aaPredicted RBP24.08■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms