RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 STRCQ7RTU9 1775 aa15.8■□□□□ 0.12
USP48-213ENST00000529637 PP2D1A8MPX8 630 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 ORC4O43929 436 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 GOLGA8HP0CJ92 632 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 CALML3P27482 149 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 APBA1Q02410 837 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 PAK1Q13153 545 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 SLC51AQ86UW1 340 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 POTEDQ86YR6 584 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 ZNF444Q8N0Y2 327 aaPredicted RBP15.79■□□□□ 0.12
USP48-213ENST00000529637 NYXQ9GZU5 481 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 CPVLQ9H3G5 476 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 COL14A1Q05707 1796 aaKnown RBP15.79■□□□□ 0.12
USP48-213ENST00000529637 TIAM2Q8IVF5 1701 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 DOCK2Q92608 1830 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 LDHBP07195 334 aaKnown RBP15.79■□□□□ 0.12
USP48-213ENST00000529637 GUCY1A3Q02108 690 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 CKAP4Q07065 602 aaKnown RBP15.79■□□□□ 0.12
USP48-213ENST00000529637 KRT26Q7Z3Y9 468 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 DNAJC7Q99615 494 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 DONSONQ9NYP3 566 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 UBA7P41226 1012 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 PRCPP42785 496 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 ATP2B2Q01814 1243 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 INF2Q27J81 1249 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 OTUD6BQ8N6M0 293 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 MB21D1Q8N884 522 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 BANK1Q8NDB2 785 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 TGFBRAP1Q8WUH2 860 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 CABS1Q96KC9 395 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 VAT1LQ9HCJ6 419 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 RWDD2AQ9UIY3 292 aa15.79■□□□□ 0.12
USP48-213ENST00000529637 PARP1P09874 1014 aaKnown RBP15.78■□□□□ 0.12
USP48-213ENST00000529637 TNFRSF25Q93038 417 aa15.78■□□□□ 0.12
USP48-213ENST00000529637 CICQ96RK0 1608 aaPredicted RBP15.78■□□□□ 0.12
USP48-213ENST00000529637 SEC24CP53992 1094 aa15.78■□□□□ 0.12
USP48-213ENST00000529637 DTHD1Q6ZMT9 781 aa15.78■□□□□ 0.12
USP48-213ENST00000529637 MAPKAPK5Q8IW41 473 aa15.78■□□□□ 0.12
USP48-213ENST00000529637 RPGRIP1Q96KN7 1286 aa15.78■□□□□ 0.12
USP48-213ENST00000529637 NHSL1Q5SYE7 1610 aa15.78■□□□□ 0.12
USP48-213ENST00000529637 BCL9LQ86UU0 1499 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 KRT86O43790 486 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 GTPBP6O43824 516 aaPredicted RBP15.77■□□□□ 0.12
USP48-213ENST00000529637 RPN1P04843 607 aaKnown RBP15.77■□□□□ 0.12
USP48-213ENST00000529637 TRIM14Q14142 442 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 IL17AQ16552 155 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 SH3RF3Q8TEJ3 882 aaPredicted RBP15.77■□□□□ 0.12
USP48-213ENST00000529637 RNPC3Q96LT9 517 aaKnown RBP15.77■□□□□ 0.12
USP48-213ENST00000529637 CAPN6Q9Y6Q1 641 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 ARAP2Q8WZ64 1704 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 FAM205AQ6ZU69 1335 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 RASSF10A6NK89 507 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 GOLGA8KD6RF30 607 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 ZNF263O14978 683 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 NKRFO15226 690 aaKnown RBP eCLIP15.77■□□□□ 0.12
USP48-213ENST00000529637 MEFVO15553 781 aaPredicted RBP15.77■□□□□ 0.12
USP48-213ENST00000529637 PLEKP08567 350 aaPredicted RBP15.77■□□□□ 0.12
USP48-213ENST00000529637 SPTY2D1Q68D10 685 aaPredicted RBP15.77■□□□□ 0.12
USP48-213ENST00000529637 ZIM3Q96PE6 472 aa15.77■□□□□ 0.12
USP48-213ENST00000529637 NHEJ1Q9H9Q4 299 aaPredicted RBP15.77■□□□□ 0.12
USP48-213ENST00000529637 SPATA31A5Q5VU36 1347 aa15.77■□□□□ 0.11
USP48-213ENST00000529637 SPATA31A7Q8IWB4 1347 aa15.77■□□□□ 0.11
USP48-213ENST00000529637 SCP2P22307 547 aa15.77■□□□□ 0.11
USP48-213ENST00000529637 RCSD1Q6JBY9 416 aa15.77■□□□□ 0.11
USP48-213ENST00000529637 GBP6Q6ZN66 633 aa15.77■□□□□ 0.11
USP48-213ENST00000529637 ZKSCAN4Q969J2 545 aaPredicted RBP15.77■□□□□ 0.11
USP48-213ENST00000529637 MYH13Q9UKX3 1938 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 TRAPPC10P48553 1259 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 SPATA4Q8NEY3 305 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 MLXIPQ9HAP2 919 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 RMND1Q9NWS8 449 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 CAPN11Q9UMQ6 739 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 MYH10P35580 1976 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 DUOX1Q9NRD9 1551 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 ZSCAN5CA6NGD5 496 aaPredicted RBP15.76■□□□□ 0.11
USP48-213ENST00000529637 USP8P40818 1118 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 NNTQ13423 1086 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 NFRKBQ6P4R8 1299 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 ZNF507Q8TCN5 953 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 C8orf37Q96NL8 207 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 LRWD1Q9UFC0 647 aa15.76■□□□□ 0.11
USP48-213ENST00000529637 B4DLN1 442 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 FGRP09769 529 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 SKOR1P84550 965 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 PDXDC2PQ6P474 469 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 NGLY1Q96IV0 654 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 TRIM47Q96LD4 638 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 PCMTD1Q96MG8 357 aaPredicted RBP15.75■□□□□ 0.11
USP48-213ENST00000529637 PCDHA4Q9UN74 947 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 RTCBQ9Y3I0 505 aaKnown RBP15.75■□□□□ 0.11
USP48-213ENST00000529637 ESYT3A0FGR9 886 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 KIAA0754O94854 1291 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 FSBPO95073 299 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 FAM153BP0C7A2 387 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 SPAG1Q07617 926 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 ACTN3Q08043 901 aaPredicted RBP15.75■□□□□ 0.11
USP48-213ENST00000529637 FAM153CQ494X1 144 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 RNF187Q5TA31 235 aaPredicted RBP15.75■□□□□ 0.11
USP48-213ENST00000529637 NAA35Q5VZE5 725 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 TYW1BQ6NUM6 668 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms