RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MCM5P33992 734 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 TSGA10IPQ3SY00 556 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 RCSD1Q6JBY9 416 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 NOL8Q76FK4 1167 aaKnown RBP11.83□□□□□ -0.52
VPS28-204ENST00000526054 CYB5R4Q7L1T6 521 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 ENAHQ8N8S7 591 aaPredicted RBP11.83□□□□□ -0.52
VPS28-204ENST00000526054 MAFAQ8NHW3 353 aaPredicted RBP11.83□□□□□ -0.52
VPS28-204ENST00000526054 ANKS1AQ92625 1134 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 TRERF1Q96PN7 1200 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 MTA3Q9BTC8 594 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 TTYH1Q9H313 450 aaPredicted RBP11.83□□□□□ -0.52
VPS28-204ENST00000526054 SEMA6BQ9H3T3 888 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 KAT14Q9H8E8 782 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 CCPG1Q9ULG6 757 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 PRR12Q9ULL5 1215 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.82□□□□□ -0.52
VPS28-204ENST00000526054 SOWAHBA6NEL2 793 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 ARVCFO00192 962 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 IFIT3O14879 490 aaKnown RBP11.82□□□□□ -0.52
VPS28-204ENST00000526054 TLR3O15455 904 aaKnown RBP11.82□□□□□ -0.52
VPS28-204ENST00000526054 FOSL2P15408 326 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 SNAP25P60880 206 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 BEX3Q00994 111 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 TNFAIP2Q03169 654 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 WTAPQ15007 396 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 IFIT1BQ5T764 474 aaKnown RBP11.82□□□□□ -0.52
VPS28-204ENST00000526054 MFSD5Q6N075 450 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 TLK2Q86UE8 772 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 FAM126BQ8IXS8 530 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 DCAF4Q8WV16 495 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 MYLIPQ8WY64 445 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 KCNB2Q92953 911 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 NEK1Q96PY6 1258 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 USP26Q9BXU7 913 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 PPP1R12CQ9BZL4 782 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 ASTN1O14525 1302 aa11.82□□□□□ -0.52
VPS28-204ENST00000526054 CTAGE5O15320 804 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 PRC1O43663 620 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 ICAM1P05362 532 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 HMGB1P09429 215 aaKnown RBP11.81□□□□□ -0.52
VPS28-204ENST00000526054 DNAJB2P25686 324 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 CDK7P50613 346 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 NKX3-2P78367 333 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 PPIGQ13427 754 aaKnown RBP eCLIP11.81□□□□□ -0.526e-8■□□□□ 10.8
VPS28-204ENST00000526054 SEC23AQ15436 765 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 MUM1L1Q5H9M0 696 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 TMEM67Q5HYA8 995 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 NSMFQ6X4W1 530 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 FBXO16Q8IX29 292 aaPredicted RBP11.81□□□□□ -0.52
VPS28-204ENST00000526054 RASEFQ8IZ41 740 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 TMEM199Q8N511 208 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 PNMA1Q8ND90 353 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 TMEM87BQ96K49 555 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.81□□□□□ -0.524e-7■■■■□ 21.8
VPS28-204ENST00000526054 COL25A1Q9BXS0 654 aaPredicted RBP11.81□□□□□ -0.52
VPS28-204ENST00000526054 CYP39A1Q9NYL5 469 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 SNX14Q9Y5W7 946 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 DDX49Q9Y6V7 483 aaKnown RBP11.81□□□□□ -0.52
VPS28-204ENST00000526054 WDR19Q8NEZ3 1342 aa11.81□□□□□ -0.52
VPS28-204ENST00000526054 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.8□□□□□ -0.52
VPS28-204ENST00000526054 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.8□□□□□ -0.52
VPS28-204ENST00000526054 CABYRO75952 493 aa11.8□□□□□ -0.52
VPS28-204ENST00000526054 PDHBP11177 359 aa11.8□□□□□ -0.52
VPS28-204ENST00000526054 CSF2RAP15509 400 aa11.8□□□□□ -0.52
VPS28-204ENST00000526054 PSMA5P28066 241 aa11.8□□□□□ -0.52
VPS28-204ENST00000526054 ANTXR2P58335 489 aa11.8□□□□□ -0.52
VPS28-204ENST00000526054 FSCN1Q16658 493 aaKnown RBP11.8□□□□□ -0.52
VPS28-204ENST00000526054 PSRC1Q6PGN9 363 aaPredicted RBP11.8□□□□□ -0.52
VPS28-204ENST00000526054 CXCL17Q6UXB2 119 aa11.8□□□□□ -0.52
VPS28-204ENST00000526054 EEPD1Q7L9B9 569 aa11.8□□□□□ -0.52
VPS28-204ENST00000526054 CHST3Q7LGC8 479 aa11.8□□□□□ -0.52
VPS28-204ENST00000526054 JAKMIP1Q96N16 626 aaKnown RBP11.8□□□□□ -0.52
VPS28-204ENST00000526054 AP5M1Q9H0R1 490 aa11.8□□□□□ -0.52
VPS28-204ENST00000526054 RANBP17Q9H2T7 1088 aaKnown RBP11.8□□□□□ -0.52
VPS28-204ENST00000526054 GNEQ9Y223 722 aaKnown RBP11.8□□□□□ -0.52
VPS28-204ENST00000526054 FRMPD2Q68DX3 1309 aaPredicted RBP11.8□□□□□ -0.52
VPS28-204ENST00000526054 MYO9BQ13459 2157 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 SPTBN5Q9NRC6 3674 aaKnown RBP11.79□□□□□ -0.52
VPS28-204ENST00000526054 GBF1Q92538 1859 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 SH2B2O14492 632 aaPredicted RBP11.79□□□□□ -0.52
VPS28-204ENST00000526054 ZEB2O60315 1214 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 SMPD1P17405 629 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 SLC16A2P36021 539 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 ADCK5Q3MIX3 580 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 C8orf34Q49A92 452 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 GPATCH4Q5T3I0 446 aaKnown RBP11.79□□□□□ -0.52
VPS28-204ENST00000526054 SYDE2Q5VT97 1194 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 TTBK2Q6IQ55 1244 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 BLOC1S2Q6QNY1 142 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 DHX32Q7L7V1 743 aaKnown RBP11.79□□□□□ -0.52
VPS28-204ENST00000526054 TMTC2Q8N394 836 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 VTA1Q9NP79 307 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 PDGFCQ9NRA1 345 aa11.79□□□□□ -0.52
VPS28-204ENST00000526054 ADD3Q9UEY8 706 aaKnown RBP11.79□□□□□ -0.52
VPS28-204ENST00000526054 MYH6P13533 1939 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 PTPDC1A2A3K4 754 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 CCDC69A6NI79 296 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 NFIBO00712 420 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 DYNC1LI2O43237 492 aaPredicted RBP11.78□□□□□ -0.52
VPS28-204ENST00000526054 CD4P01730 458 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms