RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 INF2Q27J81 1249 aa6.59□□□□□ -1.35
CD44-215ENST00000525241 C2orf27AQ580R0 203 aa6.59□□□□□ -1.35
CD44-215ENST00000525241 TMEM67Q5HYA8 995 aa6.59□□□□□ -1.35
CD44-215ENST00000525241 FAM209AQ5JX71 171 aa6.59□□□□□ -1.35
CD44-215ENST00000525241 E4F1Q66K89 784 aaPredicted RBP6.59□□□□□ -1.35
CD44-215ENST00000525241 MCTP1Q6DN14 999 aa6.59□□□□□ -1.35
CD44-215ENST00000525241 SCUBE1Q8IWY4 988 aa6.59□□□□□ -1.35
CD44-215ENST00000525241 NLGN2Q8NFZ4 835 aa6.59□□□□□ -1.35
CD44-215ENST00000525241 FAM168AQ92567 244 aa6.59□□□□□ -1.35
CD44-215ENST00000525241 EXOC2Q96KP1 924 aa6.59□□□□□ -1.35
CD44-215ENST00000525241 YBX2Q9Y2T7 364 aaKnown RBP6.59□□□□□ -1.35
CD44-215ENST00000525241 ZNF503-AS2A6NEH8 195 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.58□□□□□ -1.36
CD44-215ENST00000525241 MEFVO15553 781 aaPredicted RBP6.58□□□□□ -1.36
CD44-215ENST00000525241 PPP1R11O60927 126 aaPredicted RBP6.58□□□□□ -1.36
CD44-215ENST00000525241 MSL3P1P0C860 447 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 PRKCAP17252 672 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 NTRK3Q16288 839 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 IQCEQ6IPM2 695 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 SIRT2Q8IXJ6 389 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 PPIL6Q8IXY8 311 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 NUP43Q8NFH3 380 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 KANSL2Q9H9L4 492 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 CRTAC1Q9NQ79 661 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 NPFFR2Q9Y5X5 522 aa6.58□□□□□ -1.36
CD44-215ENST00000525241 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.58□□□□□ -1.36
CD44-215ENST00000525241 TRBV23-1A0A0A0MS06 115 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 PNLIPP16233 465 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 LTBRP36941 435 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 CORO7P57737 925 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 SQSTM1Q13501 440 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 ZC3H12BQ5HYM0 836 aaKnown RBP6.57□□□□□ -1.36
CD44-215ENST00000525241 SH3TC2Q8TF17 1288 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 DPF3Q92784 378 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 DIO2Q92813 273 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 KISS1RQ969F8 398 aaPredicted RBP6.57□□□□□ -1.36
CD44-215ENST00000525241 RNPC3Q96LT9 517 aaKnown RBP6.57□□□□□ -1.36
CD44-215ENST00000525241 SLC26A8Q96RN1 970 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 CDC6Q99741 560 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 DHRS4Q9BTZ2 278 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 PTCH2Q9Y6C5 1203 aa6.57□□□□□ -1.36
CD44-215ENST00000525241 BLACEA4D250 179 aa6.56□□□□□ -1.36
CD44-215ENST00000525241 LCP1P13796 627 aa6.56□□□□□ -1.36
CD44-215ENST00000525241 CYP4F8P98187 520 aa6.56□□□□□ -1.36
CD44-215ENST00000525241 KCNAB2Q13303 367 aa6.56□□□□□ -1.36
CD44-215ENST00000525241 USP53Q70EK8 1073 aa6.56□□□□□ -1.36
CD44-215ENST00000525241 NOP9Q86U38 636 aaKnown RBP6.56□□□□□ -1.36
CD44-215ENST00000525241 RCBTB1Q8NDN9 531 aa6.56□□□□□ -1.36
CD44-215ENST00000525241 ZSWIM2Q8NEG5 633 aa6.56□□□□□ -1.36
CD44-215ENST00000525241 LIN37Q96GY3 246 aaPredicted RBP6.56□□□□□ -1.36
CD44-215ENST00000525241 PDLIM7Q9NR12 457 aa6.56□□□□□ -1.36
CD44-215ENST00000525241 GULP1Q9UBP9 304 aa6.56□□□□□ -1.36
CD44-215ENST00000525241 MRPS23Q9Y3D9 190 aaKnown RBP6.56□□□□□ -1.36
CD44-215ENST00000525241 NPHS1O60500 1241 aa6.55□□□□□ -1.36
CD44-215ENST00000525241 C6orf222P0C671 652 aaPredicted RBP6.55□□□□□ -1.36
CD44-215ENST00000525241 JAZF1Q86VZ6 243 aa6.55□□□□□ -1.36
CD44-215ENST00000525241 DCAF4Q8WV16 495 aa6.55□□□□□ -1.36
CD44-215ENST00000525241 INTS4Q96HW7 963 aaKnown RBP6.55□□□□□ -1.36
CD44-215ENST00000525241 MTA3Q9BTC8 594 aa6.55□□□□□ -1.36
CD44-215ENST00000525241 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.55□□□□□ -1.36
CD44-215ENST00000525241 FBLN5Q9UBX5 448 aa6.55□□□□□ -1.36
CD44-215ENST00000525241 A0A1W2PQ27 194 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 A0A1W2PQ64 194 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 A0A1W2PQC6 194 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 A0A1W2PQD8 194 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 SUMO1P63165 101 aaKnown RBP6.54□□□□□ -1.36
CD44-215ENST00000525241 STYK1Q6J9G0 422 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 KCNT2Q6UVM3 1135 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 RSPO2Q6UXX9 243 aaPredicted RBP6.54□□□□□ -1.36
CD44-215ENST00000525241 IPO9Q96P70 1041 aaKnown RBP6.54□□□□□ -1.36
CD44-215ENST00000525241 PHF20Q9BVI0 1012 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 SLC6A17Q9H1V8 727 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 TNFRSF12AQ9NP84 129 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 GPR27Q9NS67 375 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 RWDD3Q9Y3V2 267 aa6.54□□□□□ -1.36
CD44-215ENST00000525241 TIMM13Q9Y5L4 95 aaPredicted RBP6.54□□□□□ -1.36
CD44-215ENST00000525241 ASXL2Q76L83 1435 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 CCDC163A0A0D9SF12 145 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 MSCO60682 206 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 SDHBP21912 280 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 TACR1P25103 407 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 ERVFRD-1P60508 538 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 GIMAP6Q6P9H5 292 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 IRF2BP1Q8IU81 584 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 LZTR1Q8N653 840 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 PLEKHO2Q8TD55 490 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 TMEM260Q9NX78 707 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.53□□□□□ -1.36
CD44-215ENST00000525241 FBXL7Q9UJT9 491 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 PCDHA2Q9Y5H9 948 aa6.53□□□□□ -1.36
CD44-215ENST00000525241 MRPL42Q9Y6G3 142 aaKnown RBP6.53□□□□□ -1.36
CD44-215ENST00000525241 ARL4AP40617 200 aa6.52□□□□□ -1.37
CD44-215ENST00000525241 BCL6P41182 706 aa6.52□□□□□ -1.37
CD44-215ENST00000525241 RPL11P62913 178 aaKnown RBP6.52□□□□□ -1.37
CD44-215ENST00000525241 ADGRF1Q5T601 910 aa6.52□□□□□ -1.37
CD44-215ENST00000525241 NLRP10Q86W26 655 aa6.52□□□□□ -1.37
CD44-215ENST00000525241 Q8N1Y9 231 aa6.52□□□□□ -1.37
CD44-215ENST00000525241 TBX22Q9Y458 520 aa6.52□□□□□ -1.37
CD44-215ENST00000525241 ESYT3A0FGR9 886 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 MYO1BO43795 1136 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms