RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 ELF2Q15723 593 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 NTRK3Q16288 839 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 ICE2Q659A1 982 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 MCATQ8IVS2 390 aaKnown RBP6.62□□□□□ -1.35
USP47-204ENST00000525078 ZC3H7AQ8IWR0 971 aaKnown RBP6.62□□□□□ -1.35
USP47-204ENST00000525078 IGSF22Q8N9C0 903 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 SLC35G2Q8TBE7 412 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 CHTF18Q8WVB6 975 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 ATXN2LQ8WWM7 1075 aaKnown RBP6.62□□□□□ -1.35
USP47-204ENST00000525078 TMEM87BQ96K49 555 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 CCDC140Q96MF4 163 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 WNT10AQ9GZT5 417 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 RNF38Q9H0F5 515 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.62□□□□□ -1.35
USP47-204ENST00000525078 FAM204AQ9H8W3 233 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 TRIM33Q9UPN9 1127 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 RABGAP1Q9Y3P9 1069 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 ZNF451Q9Y4E5 1061 aa6.62□□□□□ -1.35
USP47-204ENST00000525078 EPB41L2O43491 1005 aaKnown RBP6.61□□□□□ -1.35
USP47-204ENST00000525078 PQBP1O60828 265 aaKnown RBP6.61□□□□□ -1.35
USP47-204ENST00000525078 ECEL1O95672 775 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 MYBP10242 640 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 ITGA4P13612 1032 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 MAOBP27338 520 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 DDIT3P35638 169 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 ECI1P42126 302 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 USP14P54578 494 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 GFRA1P56159 465 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 HTRA3P83110 453 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 RRP12Q5JTH9 1297 aaKnown RBP6.61□□□□□ -1.35
USP47-204ENST00000525078 HYIQ5T013 277 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 GTF2IRD2BQ6EKJ0 949 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 ABHD17CQ6PCB6 329 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 ELMSAN1Q6PJG2 1045 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 CHST15Q7LFX5 561 aaPredicted RBP6.61□□□□□ -1.35
USP47-204ENST00000525078 MAATS1Q7Z4T9 603 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 GTF2IRD2Q86UP8 949 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 TMEM145Q8NBT3 493 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 CLRN3Q8NCR9 226 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 SLC16A10Q8TF71 515 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 RCC1LQ96I51 464 aaKnown RBP6.61□□□□□ -1.35
USP47-204ENST00000525078 CCDC138Q96M89 665 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 SMG9Q9H0W8 520 aaKnown RBP6.61□□□□□ -1.35
USP47-204ENST00000525078 NUCKS1Q9H1E3 243 aaKnown RBP6.61□□□□□ -1.35
USP47-204ENST00000525078 TJP2Q9UDY2 1190 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.61□□□□□ -1.35
USP47-204ENST00000525078 HDAC9Q9UKV0 1011 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 TPX2Q9ULW0 747 aaKnown RBP6.61□□□□□ -1.35
USP47-204ENST00000525078 DNM3Q9UQ16 869 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 PCDHA8Q9Y5H6 950 aa6.61□□□□□ -1.35
USP47-204ENST00000525078 WDR64B1ANS9 1081 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 TPP1O14773 563 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 BNIP3LO60238 219 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 ZNF862O60290 1169 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 AGR2O95994 175 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 CD247P20963 164 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 EPHA1P21709 976 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 HOXC12P31275 282 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 ECE1P42892 770 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 ALDH5A1P51649 535 aaPredicted RBP6.6□□□□□ -1.35
USP47-204ENST00000525078 GTF2A2P52657 109 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 SCAND1P57086 179 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 KRT85P78386 507 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 DDX10Q13206 875 aaKnown RBP6.6□□□□□ -1.35
USP47-204ENST00000525078 DDB1Q16531 1140 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 NOL9Q5SY16 702 aaKnown RBP6.6□□□□□ -1.35
USP47-204ENST00000525078 CYB5RLQ6IPT4 315 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 GDF6Q6KF10 455 aaPredicted RBP6.6□□□□□ -1.35
USP47-204ENST00000525078 CCDC149Q6ZUS6 474 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 TRIM46Q7Z4K8 759 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 SRGAP1Q7Z6B7 1085 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 CACTIN-AS1Q8N1I8 211 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 NKAPQ8N5F7 415 aaKnown RBP6.6□□□□□ -1.35
USP47-204ENST00000525078 SPATA5Q8NB90 893 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 BAHD1Q8TBE0 780 aaPredicted RBP6.6□□□□□ -1.35
USP47-204ENST00000525078 DCAF4Q8WV16 495 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 SLC5A5Q92911 643 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 ABHD17AQ96GS6 310 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 CSRNP2Q9H175 543 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 SOX17Q9H6I2 414 aaPredicted RBP6.6□□□□□ -1.35
USP47-204ENST00000525078 CYP26B1Q9NR63 512 aa6.6□□□□□ -1.35
USP47-204ENST00000525078 TRMT13Q9NUP7 481 aaKnown RBP6.6□□□□□ -1.35
USP47-204ENST00000525078 EVLQ9UI08 416 aaPredicted RBP6.6□□□□□ -1.35
USP47-204ENST00000525078 ASXL2Q76L83 1435 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 hCG_1642624A0A1W2PR95 340 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 FAM181BA6NEQ2 426 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 SOD2P04179 222 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 KCNA6P17658 529 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 MAPK9P45984 424 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 SCARF1Q14162 830 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 ZNF267Q14586 743 aaPredicted RBP6.59□□□□□ -1.35
USP47-204ENST00000525078 PPP2R5DQ14738 602 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 LLGL1Q15334 1064 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 PRSS53Q2L4Q9 553 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 SLC6A19Q695T7 634 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 STYK1Q6J9G0 422 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 MRPL14Q6P1L8 145 aaKnown RBP6.59□□□□□ -1.35
USP47-204ENST00000525078 KCNT2Q6UVM3 1135 aa6.59□□□□□ -1.35
USP47-204ENST00000525078 SUGP1Q8IWZ8 645 aaKnown RBP6.59□□□□□ -1.35
USP47-204ENST00000525078 C7orf61Q8IZ16 206 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms