RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 TSPY3P0CV98 308 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 TSPY8P0CW00 308 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 ATP5JP18859 108 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 MCCP23508 829 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 KCNJ6P48051 423 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 STAT2P52630 851 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 OAZ1P54368 228 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 NBPF20Q3BBV1 942 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 IQSEC1Q6DN90 963 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 OR6J1Q8NGC5 347 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 STRBPQ96SI9 672 aaKnown RBP13.85□□□□□ -0.19
SDCBP-211ENST00000523441 MTMR4Q9NYA4 1195 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 ZNF536O15090 1300 aa13.85□□□□□ -0.19
SDCBP-211ENST00000523441 IGKV6D-41A0A0C4DH26 115 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 PFKMP08237 780 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 IQCF3P0C7M6 154 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 POU3F3P20264 500 aaPredicted RBP13.84□□□□□ -0.19
SDCBP-211ENST00000523441 SLC1A4P43007 532 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 NKX3-2P78367 333 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 CSPP1Q1MSJ5 1256 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 EP400NLQ6ZTU2 488 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 CRBNQ96SW2 442 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 WDR11Q9BZH6 1224 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 POLR3EQ9NVU0 708 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 CYP39A1Q9NYL5 469 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 CCPG1Q9ULG6 757 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 BRWD1Q9NSI6 2320 aa13.84□□□□□ -0.19
SDCBP-211ENST00000523441 PTPDC1A2A3K4 754 aa13.83□□□□□ -0.2
SDCBP-211ENST00000523441 LPXNO60711 386 aa13.83□□□□□ -0.2
SDCBP-211ENST00000523441 KCNA5P22460 613 aa13.83□□□□□ -0.2
SDCBP-211ENST00000523441 PURAQ00577 322 aaKnown RBP13.83□□□□□ -0.2
SDCBP-211ENST00000523441 CCDC96Q2M329 555 aa13.83□□□□□ -0.2
SDCBP-211ENST00000523441 SBK1Q52WX2 424 aa13.83□□□□□ -0.2
SDCBP-211ENST00000523441 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.83□□□□□ -0.2
SDCBP-211ENST00000523441 GMCL1P1Q8NEA9 526 aa13.83□□□□□ -0.2
SDCBP-211ENST00000523441 CHURC1Q8WUH1 139 aa13.83□□□□□ -0.2
SDCBP-211ENST00000523441 COPS5Q92905 334 aa13.83□□□□□ -0.2
SDCBP-211ENST00000523441 MTG1Q9BT17 334 aaPredicted RBP13.83□□□□□ -0.2
SDCBP-211ENST00000523441 EPB41L4AQ9HCS5 686 aaPredicted RBP13.83□□□□□ -0.2
SDCBP-211ENST00000523441 VTA1Q9NP79 307 aa13.83□□□□□ -0.2
SDCBP-211ENST00000523441 PI4K2BG5E9Z4 385 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 HMMRO75330 724 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 IL9P15248 144 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 CALML3P27482 149 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 MRE11P49959 708 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 CPT1AP50416 773 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 DEFB103AP81534 67 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 TFAP4Q01664 338 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 BAATQ14032 418 aaPredicted RBP13.82□□□□□ -0.2
SDCBP-211ENST00000523441 DUSP28Q4G0W2 176 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 TSHZ3Q63HK5 1081 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 FAM160B2Q86V87 743 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 GJD3Q8N144 294 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 STAG1Q8WVM7 1258 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 OSBP2Q969R2 916 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 MKL1Q969V6 931 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 SEZ6LQ9BYH1 1024 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 UBE2ZQ9H832 354 aaPredicted RBP13.82□□□□□ -0.2
SDCBP-211ENST00000523441 PRR12Q9ULL5 1215 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 STX8Q9UNK0 236 aa13.82□□□□□ -0.2
SDCBP-211ENST00000523441 ARIH1Q9Y4X5 557 aaPredicted RBP13.82□□□□□ -0.2
SDCBP-211ENST00000523441 SIP14410 1827 aa13.81□□□□□ -0.2
SDCBP-211ENST00000523441 M0R2C6 588 aa13.81□□□□□ -0.2
SDCBP-211ENST00000523441 RFC2P35250 354 aa13.81□□□□□ -0.2
SDCBP-211ENST00000523441 SLC16A2P36021 539 aa13.81□□□□□ -0.2
SDCBP-211ENST00000523441 TKFCQ3LXA3 575 aa13.81□□□□□ -0.2
SDCBP-211ENST00000523441 SIRT2Q8IXJ6 389 aa13.81□□□□□ -0.2
SDCBP-211ENST00000523441 PHOSPHO2Q8TCD6 241 aa13.81□□□□□ -0.2
SDCBP-211ENST00000523441 ZNF287Q9HBT7 754 aa13.81□□□□□ -0.2
SDCBP-211ENST00000523441 Q9Y3F1 56 aa13.81□□□□□ -0.2
SDCBP-211ENST00000523441 NFIBO00712 420 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 GPAA1O43292 621 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 NMT2O60551 498 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 RAB11FIP3O75154 756 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 ALDH5A1P51649 535 aaPredicted RBP13.8□□□□□ -0.2
SDCBP-211ENST00000523441 WDR5P61964 334 aaKnown RBP13.8□□□□□ -0.2
SDCBP-211ENST00000523441 BFSP2Q13515 415 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 PTGISQ16647 500 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 CHST3Q7LGC8 479 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 POTEDQ86YR6 584 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 RPAP2Q8IXW5 612 aaPredicted RBP13.8□□□□□ -0.2
SDCBP-211ENST00000523441 INCENPQ9NQS7 918 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 SCN10AQ9Y5Y9 1956 aa13.8□□□□□ -0.2
SDCBP-211ENST00000523441 PRR33A8MZF0 331 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 H3BQ06 376 aaPredicted RBP13.79□□□□□ -0.2
SDCBP-211ENST00000523441 FDX1P10109 184 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 PDE4DQ08499 809 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 PPP2R5BQ15173 497 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 BRDTQ58F21 947 aaPredicted RBP13.79□□□□□ -0.2
SDCBP-211ENST00000523441 TTBK2Q6IQ55 1244 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 PTCRAQ6ISU1 281 aaPredicted RBP13.79□□□□□ -0.2
SDCBP-211ENST00000523441 SLC30A10Q6XR72 485 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 FAM178BQ8IXR5 827 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 NEDD1Q8NHV4 660 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.79□□□□□ -0.2
SDCBP-211ENST00000523441 SUGCTQ9HAC7 445 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 GPCPD1Q9NPB8 672 aa13.79□□□□□ -0.2
SDCBP-211ENST00000523441 ADD3Q9UEY8 706 aaKnown RBP13.79□□□□□ -0.2
SDCBP-211ENST00000523441 FRMPD2Q68DX3 1309 aaPredicted RBP13.79□□□□□ -0.2
SDCBP-211ENST00000523441 CTDSPL2Q05D32 466 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms