RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, human

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-215	ENST00000522963	PGK2	P07205	417 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	WWC2	Q6AWC2	1192 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	HEATR3	Q7Z4Q2	680 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	FBXO11	Q86XK2	927 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	FAM184A	Q8NB25	1140 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	USP6NL	Q92738	828 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	SHISA4	Q96DD7	197 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	CCPG1	Q9ULG6	757 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	STXBP3	O00186	592 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	ATP2A1	O14983	1001 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	COBL	O75128	1261 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	XRCC5	P13010	732 aa	Known RBP	13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	FOSB	P53539	338 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	OAZ1	P54368	228 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	USH1G	Q495M9	461 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	TYW1B	Q6NUM6	668 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	ANKRD35	Q8N283	1001 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	WASF1	Q92558	559 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	IPO9	Q96P70	1041 aa	Known RBP	13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	TRERF1	Q96PN7	1200 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	AMN	Q9BXJ7	453 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	GJB4	Q9NTQ9	266 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	RNF146	Q9NTX7	359 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	BARHL2	Q9NY43	387 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	SLC5A4	Q9NY91	659 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	FLRT1	Q9NZU1	646 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	VPS54	Q9P1Q0	977 aa		13.74	□□□□□ -0.21
PVT1-215	ENST00000522963	PRKAR2A	P13861	404 aa	Known RBP	13.73	□□□□□ -0.21
PVT1-215	ENST00000522963	EN2	P19622	333 aa	Predicted RBP	13.73	□□□□□ -0.21
PVT1-215	ENST00000522963	MFSD14C	Q5VZR4	134 aa		13.73	□□□□□ -0.21
PVT1-215	ENST00000522963	TRMT44	Q8IYL2	757 aa	Known RBP	13.73	□□□□□ -0.21
PVT1-215	ENST00000522963	CHST13	Q8NET6	341 aa		13.73	□□□□□ -0.21
PVT1-215	ENST00000522963	DAXX	Q9UER7	740 aa	Predicted RBP	13.73	□□□□□ -0.21
PVT1-215	ENST00000522963	FBXO40	Q9UH90	709 aa		13.73	□□□□□ -0.21
PVT1-215	ENST00000522963	PCDHA1	Q9Y5I3	950 aa		13.73	□□□□□ -0.21
PVT1-215	ENST00000522963	PLXNA1	Q9UIW2	1896 aa		13.73	□□□□□ -0.21
PVT1-215	ENST00000522963	hCG_1984214	I3L0E3	225 aa		13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	CYP2C19	P33261	490 aa		13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	NAPA	P54920	295 aa		13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	CACNB2	Q08289	660 aa	Predicted RBP	13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	NSMF	Q6X4W1	530 aa		13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	ABRA	Q8N0Z2	381 aa		13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	ZNF713	Q8N859	430 aa	Predicted RBP	13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	ACAD9	Q9H845	621 aa		13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	HMX1	Q9NP08	348 aa	Predicted RBP	13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	KIF3A	Q9Y496	699 aa		13.72	□□□□□ -0.21
PVT1-215	ENST00000522963	ABCB11	O95342	1321 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	HOXC6	P09630	235 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	CNGA1	P29973	690 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	TRAF1	Q13077	416 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	TKFC	Q3LXA3	575 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	MUM1L1	Q5H9M0	696 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	LARP1B	Q659C4	914 aa	Known RBP	13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	KRT40	Q6A162	431 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	PPP1R18	Q6NYC8	613 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	CLEC4D	Q8WXI8	215 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	C8orf76	Q96K31	380 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	DEFB118	Q96PH6	123 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.71	□□□□□ -0.21	4e-6	■■■□□ 17.4
PVT1-215	ENST00000522963	SH3GLB2	Q9NR46	395 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	PNMA2	Q9UL42	364 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	KCNJ14	Q9UNX9	436 aa		13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	MRPL11	Q9Y3B7	192 aa	Known RBP	13.71	□□□□□ -0.21
PVT1-215	ENST00000522963	ZNF236	Q9UL36	1845 aa		13.71	□□□□□ -0.22
PVT1-215	ENST00000522963	RPTOR	Q8N122	1335 aa		13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	OPLAH	O14841	1288 aa		13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	TFRC	P02786	760 aa	Known RBP	13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	XBP1	P17861	261 aa		13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	CCND3	P30281	292 aa	Predicted RBP	13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	GUCY1B3	Q02153	619 aa		13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	FBXO18	Q8NFZ0	1043 aa		13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	MAML3	Q96JK9	1138 aa		13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	PHF20	Q9BVI0	1012 aa		13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	MCM3AP	O60318	1980 aa		13.7	□□□□□ -0.22
PVT1-215	ENST00000522963	ESYT2	A0FGR8	921 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	SMCO2	A6NFE2	343 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	POTEB2	H3BUK9	544 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	NFIB	O00712	420 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	ADAMTS3	O15072	1205 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	GJB1	P08034	283 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	PDC	P20941	246 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	SYT1	P21579	422 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	DDIT3	P35638	169 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	NLRP5	P59047	1200 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	CNTN2	Q02246	1040 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	TRIM29	Q14134	588 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	NPY5R	Q15761	445 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	ZNF792	Q3KQV3	632 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	PRAMEF19	Q5SWL8	479 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	CCDC148	Q8NFR7	591 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	U2AF1L4	Q8WU68	220 aa	Known RBP	13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	TBC1D5	Q92609	795 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	ZMYND12	Q9H0C1	365 aa		13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	A1CF	Q9NQ94	594 aa	Known RBP	13.69	□□□□□ -0.22
PVT1-215	ENST00000522963	MMP1	P03956	469 aa		13.68	□□□□□ -0.22
PVT1-215	ENST00000522963	ADCY7	P51828	1080 aa		13.68	□□□□□ -0.22
PVT1-215	ENST00000522963	OLFML2B	Q68BL8	750 aa		13.68	□□□□□ -0.22
PVT1-215	ENST00000522963	FAM177A1	Q8N128	213 aa	Predicted RBP	13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms