RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 NBNO60934 754 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 BAIAP3O94812 1187 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 SUPT20HL2P0C7V6 817 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 TRIM27P14373 513 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 RARSP54136 660 aaKnown RBP12.68□□□□□ -0.38
NEDD9-215ENST00000514660 ATP8B2P98198 1209 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 DLX2Q07687 328 aaPredicted RBP12.68□□□□□ -0.38
NEDD9-215ENST00000514660 HERC4Q5GLZ8 1057 aaPredicted RBP12.68□□□□□ -0.38
NEDD9-215ENST00000514660 TCEAL5Q5H9L2 206 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 MUM1L1Q5H9M0 696 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 IQSEC1Q6DN90 963 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 FAM117BQ6P1L5 589 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 ADHFE1Q8IWW8 467 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 MFSD14AQ96MC6 490 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 Q9Y3F1 56 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 COL4A6Q14031 1691 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 ZBED9Q6R2W3 1325 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 IGKV6D-41A0A0C4DH26 115 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 ZEB2O60315 1214 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 ZBED4O75132 1171 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 MBD4O95243 580 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 MYL3P08590 195 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 RASA1P20936 1047 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 SNAP25P60880 206 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 OS9Q13438 667 aaPredicted RBP12.67□□□□□ -0.38
NEDD9-215ENST00000514660 DUSP28Q4G0W2 176 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 FAM47CQ5HY64 1035 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 CTR9Q6PD62 1173 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 TRAF7Q6Q0C0 670 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 KIAA1211Q6ZU35 1233 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 RNF135Q8IUD6 432 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 MORC4Q8TE76 937 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 RAD9AQ99638 391 aa12.67□□□□□ -0.38
NEDD9-215ENST00000514660 MICAL3Q7RTP6 2002 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 NLRC5Q86WI3 1866 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 KCNJ6P48051 423 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 PTPN5P54829 565 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 MKRN4PQ13434 485 aaPredicted RBP12.66□□□□□ -0.38
NEDD9-215ENST00000514660 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.66□□□□□ -0.38
NEDD9-215ENST00000514660 BMP8AQ7Z5Y6 402 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 STK11IPQ8N1F8 1099 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 COPS5Q92905 334 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 PABPC5Q96DU9 382 aaKnown RBP12.66□□□□□ -0.38
NEDD9-215ENST00000514660 MRPL38Q96DV4 380 aaKnown RBP12.66□□□□□ -0.38
NEDD9-215ENST00000514660 ZBED2Q9BTP6 218 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 RNF146Q9NTX7 359 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 NYAP2Q9P242 653 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 PRKAG3Q9UGI9 489 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 FBXO40Q9UH90 709 aa12.66□□□□□ -0.38
NEDD9-215ENST00000514660 ASB14A6NK59 587 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 OAZ1P54368 228 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 VCPP55072 806 aaKnown RBP12.65□□□□□ -0.38
NEDD9-215ENST00000514660 MBTPS1Q14703 1052 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 CLUL1Q15846 466 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 PUS10Q3MIT2 529 aaKnown RBP12.65□□□□□ -0.38
NEDD9-215ENST00000514660 TMED8Q6PL24 325 aaPredicted RBP12.65□□□□□ -0.38
NEDD9-215ENST00000514660 RASGRP2Q7LDG7 609 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 RETREG2Q8NC44 543 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 FBXO22Q8NEZ5 403 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 ARHGAP45Q92619 1136 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 EDAQ92838 391 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 WNT8BQ93098 351 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 CLUAP1Q96AJ1 413 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 MTG1Q9BT17 334 aaPredicted RBP12.65□□□□□ -0.38
NEDD9-215ENST00000514660 ACAD9Q9H845 621 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 ATP8A2Q9NTI2 1148 aa12.65□□□□□ -0.38
NEDD9-215ENST00000514660 GOLIM4O00461 696 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 CXCL10P02778 98 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 FOXK2Q01167 660 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 GDF6Q6KF10 455 aaPredicted RBP12.64□□□□□ -0.39
NEDD9-215ENST00000514660 ASCL5Q7RTU5 278 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 AACSQ86V21 672 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 BANK1Q8NDB2 785 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 CHMP4CQ96CF2 233 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 POLR3EQ9NVU0 708 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 CYP39A1Q9NYL5 469 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 CLIP2Q9UDT6 1046 aa12.64□□□□□ -0.39
NEDD9-215ENST00000514660 RBM47A0AV96 593 aaKnown RBP12.63□□□□□ -0.39
NEDD9-215ENST00000514660 TMEM221A6NGB7 291 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 M0R296 226 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 MBTPS2O43462 519 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 LGR5O75473 907 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 GTF2F1P35269 517 aaKnown RBP eCLIP12.63□□□□□ -0.39
NEDD9-215ENST00000514660 ADD2P35612 726 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 SMAD2Q15796 467 aaKnown RBP12.63□□□□□ -0.39
NEDD9-215ENST00000514660 CTC1Q2NKJ3 1217 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 EPC2Q52LR7 807 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 NFRKBQ6P4R8 1299 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 CNKSR3Q6P9H4 555 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 TRIM67Q6ZTA4 783 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 EP400NLQ6ZTU2 488 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 RPAINQ86UA6 219 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 POTEDQ86YR6 584 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 LRRC47Q8N1G4 583 aaKnown RBP12.63□□□□□ -0.39
NEDD9-215ENST00000514660 TMEM57Q8N5G2 664 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 SP7Q8TDD2 431 aaPredicted RBP12.63□□□□□ -0.39
NEDD9-215ENST00000514660 PBXIP1Q96AQ6 731 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 TRERF1Q96PN7 1200 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 OSBPL7Q9BZF2 842 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 WDR11Q9BZH6 1224 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms