RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 LIMCH1Q9UPQ0 1083 aa9.62□□□□□ -0.87
CCL28-204ENST00000514421 PCDHA1Q9Y5I3 950 aa9.62□□□□□ -0.87
CCL28-204ENST00000514421 CCDC196A0A1B0GTZ2 297 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 PTPDC1A2A3K4 754 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 POTEFA5A3E0 1075 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 SOWAHBA6NEL2 793 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 ASB14A6NK59 587 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 NFIBO00712 420 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 TFRCP02786 760 aaKnown RBP9.61□□□□□ -0.87
CCL28-204ENST00000514421 EN2P19622 333 aaPredicted RBP9.61□□□□□ -0.87
CCL28-204ENST00000514421 RXRAP19793 462 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 PTMSP20962 102 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 GJA8P48165 433 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 EVCP57679 992 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 CNTN2Q02246 1040 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 APOBRQ0VD83 1088 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 RTN1Q16799 776 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 PRAMEF19Q5SWL8 479 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 TMTC3Q6ZXV5 915 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 MICU3Q86XE3 530 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 HOMER1Q86YM7 354 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 RAB11FIP4Q86YS3 637 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 SAMD3Q8N6K7 520 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 SPRYD3Q8NCJ5 442 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 ZSCAN31Q96LW9 406 aaPredicted RBP9.61□□□□□ -0.87
CCL28-204ENST00000514421 DEFB118Q96PH6 123 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.61□□□□□ -0.87
CCL28-204ENST00000514421 SH2B1Q9NRF2 756 aaPredicted RBP9.61□□□□□ -0.87
CCL28-204ENST00000514421 PDRG1Q9NUG6 133 aa9.61□□□□□ -0.87
CCL28-204ENST00000514421 MAP3K20Q9NYL2 800 aaKnown RBP9.61□□□□□ -0.87
CCL28-204ENST00000514421 ADD3Q9UEY8 706 aaKnown RBP9.61□□□□□ -0.87
CCL28-204ENST00000514421 NAP1L2Q9ULW6 460 aaPredicted RBP9.61□□□□□ -0.87
CCL28-204ENST00000514421 SYNGAP1Q96PV0 1343 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 LOC102724159A0A0B4J2E5 919 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 GOLGA8AA7E2F4 631 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 DDX11L8A8MPP1 907 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 GOLGA8BA8MQT2 603 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 PLEKHA8P1O95397 391 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 SNAI1O95863 264 aaPredicted RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 TAL1P17542 331 aaPredicted RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 CALML3P27482 149 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 CNGA1P29973 690 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 CCND3P30281 292 aaPredicted RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 ADD1P35611 737 aaKnown RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 AK2P54819 239 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 RPS6P62753 249 aaKnown RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 PWP2Q15269 919 aaKnown RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 ANKRD1Q15327 319 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 CMTR1Q8N1G2 835 aaKnown RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 CCDC82Q8N4S0 544 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 U2AF1L4Q8WU68 220 aaKnown RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 PIBF1Q8WXW3 757 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 TBC1D5Q92609 795 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 ZNF274Q96GC6 653 aaPredicted RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 CRISPLD2Q9H0B8 497 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 FAM217BQ9NTX9 383 aaPredicted RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 SEC63Q9UGP8 760 aaKnown RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 CNPY2Q9Y2B0 182 aa9.6□□□□□ -0.87
CCL28-204ENST00000514421 BAZ2BQ9UIF8 2168 aaKnown RBP9.6□□□□□ -0.87
CCL28-204ENST00000514421 B4DLN1 442 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 SEPT4O43236 478 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 MSCO60682 206 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 PPP1R11O60927 126 aaPredicted RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 ZNF865P0CJ78 1059 aaPredicted RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 CYBAP13498 195 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 PDIA4P13667 645 aaKnown RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 PDIA3P30101 505 aaKnown RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 METAP2P50579 478 aaKnown RBP eCLIP9.59□□□□□ -0.87
CCL28-204ENST00000514421 MRPL12P52815 198 aaKnown RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 ACVR2BQ13705 512 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 TOB2Q14106 344 aaPredicted RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 TRPV1Q8NER1 839 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 DNERQ8NFT8 737 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 SPDYE1Q8NFV5 336 aaPredicted RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 SYTL5Q8TDW5 730 aaPredicted RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 FGD4Q96M96 766 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 GBP4Q96PP9 640 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 MPHOSPH6Q99547 160 aaKnown RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 ABHD16BQ9H3Z7 469 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 ZDHHC9Q9Y397 364 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 V9GY48 417 aaPredicted RBP9.59□□□□□ -0.87
CCL28-204ENST00000514421 MGAMO43451 1857 aa9.59□□□□□ -0.87
CCL28-204ENST00000514421 ZSWIM8A7E2V4 1837 aa9.59□□□□□ -0.88
CCL28-204ENST00000514421 HTTP42858 3142 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 GCOM1H8Y6P7 765 aaPredicted RBP9.58□□□□□ -0.88
CCL28-204ENST00000514421 BRD1O95696 1058 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 CFBP00751 764 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 POLR2MP0CAP2 368 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 CDC27P30260 824 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 GHRHRQ02643 423 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 FUT2Q10981 343 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 ARMCX2Q7L311 632 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 ANKLE1Q8NAG6 615 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 MORC4Q8TE76 937 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 NSUN6Q8TEA1 469 aaKnown RBP9.58□□□□□ -0.88
CCL28-204ENST00000514421 PURBQ96QR8 312 aaKnown RBP9.58□□□□□ -0.88
CCL28-204ENST00000514421 TAAR1Q96RJ0 339 aa9.58□□□□□ -0.88
CCL28-204ENST00000514421 DDX20Q9UHI6 824 aaKnown RBP9.58□□□□□ -0.88
CCL28-204ENST00000514421 OGDHLQ9ULD0 1010 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms