RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 KRT26Q7Z3Y9 468 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 HDAC7Q8WUI4 952 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 SLC24A3Q9HC58 644 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 LRWD1Q9UFC0 647 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 NARFQ9UHQ1 456 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 FAM184BQ9ULE4 1060 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 CEP83Q9Y592 693 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 FAM170AA1A519 330 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 BUB1O43683 1085 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 ORC4O43929 436 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 GBP2P32456 591 aaPredicted RBP10.72□□□□□ -0.69
VCAN-210ENST00000513960 SARSP49591 514 aaKnown RBP10.72□□□□□ -0.69
VCAN-210ENST00000513960 CUL4BQ13620 913 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 CCDC178Q5BJE1 867 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 CCNI2Q6ZMN8 369 aaPredicted RBP10.72□□□□□ -0.69
VCAN-210ENST00000513960 MMRN2Q9H8L6 949 aa10.72□□□□□ -0.69
VCAN-210ENST00000513960 AHDC1Q5TGY3 1603 aaPredicted RBP10.71□□□□□ -0.69
VCAN-210ENST00000513960 COL1A1P02452 1464 aaPredicted RBP10.71□□□□□ -0.69
VCAN-210ENST00000513960 BCL9LQ86UU0 1499 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 GOLGA8KD6RF30 607 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 NMT2O60551 498 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 MOCS3O95396 460 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 SCG2P13521 617 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 SEC24CP53992 1094 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 FUT2Q10981 343 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 WDR93Q6P2C0 686 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 PIK3AP1Q6ZUJ8 805 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 KIRREL3Q8IZU9 778 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 ZNF384Q8TF68 577 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 ANKIB1Q9P2G1 1089 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 CNTNAP4Q9C0A0 1308 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 NCK2O43639 380 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 FGRP09769 529 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 PARP1P09874 1014 aaKnown RBP10.71□□□□□ -0.69
VCAN-210ENST00000513960 CLNS1AP54105 237 aaKnown RBP10.71□□□□□ -0.69
VCAN-210ENST00000513960 PTGDRQ13258 359 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 TRIM14Q14142 442 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 KCTD19Q17RG1 926 aaPredicted RBP10.71□□□□□ -0.69
VCAN-210ENST00000513960 EARS2Q5JPH6 523 aaKnown RBP10.71□□□□□ -0.69
VCAN-210ENST00000513960 NGLY1Q96IV0 654 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 ALS2CR12Q96Q35 445 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 MLXIPQ9HAP2 919 aa10.71□□□□□ -0.69
VCAN-210ENST00000513960 DMGDHQ9UI17 866 aaKnown RBP10.71□□□□□ -0.69
VCAN-210ENST00000513960 RTCBQ9Y3I0 505 aaKnown RBP10.71□□□□□ -0.69
VCAN-210ENST00000513960 A0A087X0B3 334 aa10.71□□□□□ -0.7
VCAN-210ENST00000513960 RPS6KA4O75676 772 aa10.71□□□□□ -0.7
VCAN-210ENST00000513960 SF3B2Q13435 895 aaKnown RBP10.71□□□□□ -0.7
VCAN-210ENST00000513960 TCP11X2Q5H9J9 407 aa10.71□□□□□ -0.7
VCAN-210ENST00000513960 RPAINQ86UA6 219 aa10.71□□□□□ -0.7
VCAN-210ENST00000513960 SRBD1Q8N5C6 995 aaKnown RBP10.71□□□□□ -0.7
VCAN-210ENST00000513960 CEP89Q96ST8 783 aa10.71□□□□□ -0.7
VCAN-210ENST00000513960 VIPAS39Q9H9C1 493 aa10.71□□□□□ -0.7
VCAN-210ENST00000513960 MKNK2Q9HBH9 465 aa10.71□□□□□ -0.7
VCAN-210ENST00000513960 PHLPP1O60346 1717 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 CYP2D6P10635 497 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 ARID5AQ03989 594 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 DPYDQ12882 1025 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 NFRKBQ6P4R8 1299 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 TRAPPC11Q7Z392 1133 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 LACRTQ9GZZ8 138 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 FAM207AQ9NSI2 230 aaPredicted RBP10.7□□□□□ -0.7
VCAN-210ENST00000513960 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.7□□□□□ -0.7
VCAN-210ENST00000513960 COL22A1Q8NFW1 1626 aaPredicted RBP10.7□□□□□ -0.7
VCAN-210ENST00000513960 PRPF6O94906 941 aaKnown RBP10.7□□□□□ -0.7
VCAN-210ENST00000513960 SCP2P22307 547 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 SUGP1Q8IWZ8 645 aaKnown RBP10.7□□□□□ -0.7
VCAN-210ENST00000513960 KLHL7Q8IXQ5 586 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 ODF2LQ9ULJ1 636 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 CNTNAP5Q8WYK1 1306 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 BCORQ6W2J9 1755 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 PDE2AO00408 941 aaPredicted RBP10.7□□□□□ -0.7
VCAN-210ENST00000513960 RGL2O15211 777 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 CALML3P27482 149 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 KLK7P49862 253 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 GUCY2DQ02846 1103 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 C2CD5Q86YS7 1000 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 CCDC47Q96A33 483 aaKnown RBP10.7□□□□□ -0.7
VCAN-210ENST00000513960 GSDMAQ96QA5 445 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 PYM1Q9BRP8 204 aaKnown RBP10.7□□□□□ -0.7
VCAN-210ENST00000513960 IFIH1Q9BYX4 1025 aaKnown RBP10.7□□□□□ -0.7
VCAN-210ENST00000513960 NFU1Q9UMS0 254 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 ECM29Q5VYK3 1845 aa10.7□□□□□ -0.7
VCAN-210ENST00000513960 PDS5AQ29RF7 1337 aaKnown RBP10.69□□□□□ -0.7
VCAN-210ENST00000513960 MYH2Q9UKX2 1941 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 LDHBP07195 334 aaKnown RBP10.69□□□□□ -0.7
VCAN-210ENST00000513960 TFAP4Q01664 338 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 SBK1Q52WX2 424 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 CACNA2D4Q7Z3S7 1137 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 CSGALNACT2Q8N6G5 542 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 SHISA4Q96DD7 197 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 TBC1D31Q96DN5 1066 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 C8orf37Q96NL8 207 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 NHEJ1Q9H9Q4 299 aaPredicted RBP10.69□□□□□ -0.7
VCAN-210ENST00000513960 AGPAT5Q9NUQ2 364 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 PPP1R3GB7ZBB8 358 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 PSMA7O14818 248 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 TRAPPC10P48553 1259 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 TMED8Q6PL24 325 aaPredicted RBP10.69□□□□□ -0.7
VCAN-210ENST00000513960 RPGRIP1Q96KN7 1286 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms