RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 TRIM32Q13049 653 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 MAP2K5Q13163 448 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 BAATQ14032 418 aaPredicted RBP11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 PKN1Q16512 942 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 TKFCQ3LXA3 575 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 NSUN7Q8NE18 718 aaKnown RBP11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 RAET1EQ8TD07 263 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 SH3TC2Q8TF17 1288 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 USP6NLQ92738 828 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 DDX11Q96FC9 970 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 FGD4Q96M96 766 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 NUDT12Q9BQG2 462 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 MCOLN1Q9GZU1 580 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 GJB4Q9NTQ9 266 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 FLRT1Q9NZU1 646 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 COL20A1Q9P218 1284 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 PTPN22Q9Y2R2 807 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 ASTN1O14525 1302 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 MCM3APO60318 1980 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 SLC15A5A6NIM6 579 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 STXBP3O00186 592 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 CFBP00751 764 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 SCG2P13521 617 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 SMARCA1P28370 1054 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 RGS2P41220 211 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 NAPAP54920 295 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 RPS6P62753 249 aaKnown RBP11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 AKAP17AQ02040 695 aaKnown RBP11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 SSRP1Q08945 709 aaKnown RBP11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 PPP2R5BQ15173 497 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 UBE2SQ16763 222 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 PFKFB3Q16875 520 aaPredicted RBP11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 DPP9Q86TI2 863 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 TRIB2Q92519 343 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 TMX3Q96JJ7 454 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 APBA2Q99767 749 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 RNF26Q9BY78 433 aaPredicted RBP11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 CYP39A1Q9NYL5 469 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 VPS54Q9P1Q0 977 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 FBXO40Q9UH90 709 aa11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 MRPL11Q9Y3B7 192 aaKnown RBP11.31□□□□□ -0.6
TOPBP1-209ENST00000513818 BRCA2P51587 3418 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 DNAJC25-GNG10A0A024R161 153 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 SOWAHBA6NEL2 793 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 POTEB2H3BUK9 544 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 PRPF3O43395 683 aaKnown RBP11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 HOXD10P28358 340 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 ARHGEF6Q15052 776 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 ZNF792Q3KQV3 632 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 CPLX2Q6PUV4 134 aaKnown RBP11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 RNF207Q6ZRF8 634 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 TRIM22Q8IYM9 498 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 ABRAQ8N0Z2 381 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 PGBD1Q96JS3 809 aa11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 ORC3Q9UBD5 711 aaPredicted RBP11.3□□□□□ -0.6
TOPBP1-209ENST00000513818 STRNO43815 780 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 ADCY3O60266 1144 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 CDKL5O76039 1030 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 GNRH1P01148 92 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 FDPSP14324 419 aaKnown RBP11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 CYP2C19P33261 490 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 UBXN2AP68543 259 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 FBXO46Q6PJ61 603 aaPredicted RBP11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 USP17L6PQ6QN14 398 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 FCHSD1Q86WN1 690 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 FAM133AQ8N9E0 248 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 SYTL5Q8TDW5 730 aaPredicted RBP11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 MAML3Q96JK9 1138 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 ZSCAN31Q96LW9 406 aaPredicted RBP11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 SH2B1Q9NRF2 756 aaPredicted RBP11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 BARHL2Q9NY43 387 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 FARP1Q9Y4F1 1045 aaPredicted RBP11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 PFASO15067 1338 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 STK36Q9NRP7 1315 aa11.29□□□□□ -0.6
TOPBP1-209ENST00000513818 GTPBP6O43824 516 aaPredicted RBP11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 DEXIO95424 95 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 INHAP05111 366 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 HSD17B4P51659 736 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 PRMT2P55345 433 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 IRF5Q13568 498 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 SLC9C1Q4G0N8 1177 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 MCF2L2Q86YR7 1114 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 IL31RAQ8NI17 732 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 RASGRP4Q8TDF6 673 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 ZFP91Q96JP5 570 aaPredicted RBP11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 TAAR1Q96RJ0 339 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 TMEM260Q9NX78 707 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 BIN2Q9UBW5 565 aaPredicted RBP11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 PNMA2Q9UL42 364 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 KCNJ14Q9UNX9 436 aa11.28□□□□□ -0.6
TOPBP1-209ENST00000513818 SMCO2A6NFE2 343 aa11.27□□□□□ -0.61
TOPBP1-209ENST00000513818 GCOM1H8Y6P7 765 aaPredicted RBP11.27□□□□□ -0.61
TOPBP1-209ENST00000513818 MEIS2O14770 477 aa11.27□□□□□ -0.61
TOPBP1-209ENST00000513818 HOXC6P09630 235 aa11.27□□□□□ -0.61
TOPBP1-209ENST00000513818 POLR2MP0CAP2 368 aa11.27□□□□□ -0.61
TOPBP1-209ENST00000513818 EIF2AK2P19525 551 aaKnown RBP11.27□□□□□ -0.61
TOPBP1-209ENST00000513818 GRK4P32298 578 aa11.27□□□□□ -0.61
TOPBP1-209ENST00000513818 MCM2P49736 904 aa11.27□□□□□ -0.61
TOPBP1-209ENST00000513818 ALDH5A1P51649 535 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms