RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	SMPD1	P17405	629 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	CDK8	P49336	464 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	FSCN1	Q16658	493 aa	Known RBP	10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	SBK1	Q52WX2	424 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	C12orf60	Q5U649	245 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	ERICH6B	Q5W0A0	696 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	CENPQ	Q7L2Z9	268 aa	Predicted RBP	10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	HERC6	Q8IVU3	1022 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	VTI1A	Q96AJ9	217 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	CCDC17	Q96LX7	622 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	SLC9A7	Q96T83	725 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	SLF1	Q9BQI6	1058 aa		10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	TRMT13	Q9NUP7	481 aa	Known RBP	10.92	□□□□□ -0.66
UBE2D3-223	ENST00000508249	MICAL3	Q7RTP6	2002 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	SOWAHB	A6NEL2	793 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	PATL2	C9JE40	543 aa	Known RBP	10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	CABYR	O75952	493 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	SLC3A2	P08195	630 aa	Known RBP	10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	PFKM	P08237	780 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	GPNMB	Q14956	572 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	GJD3	Q8N144	294 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	DDX11	Q96FC9	970 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	UBE2Z	Q9H832	354 aa	Predicted RBP	10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	SPC25	Q9HBM1	224 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	SLC38A10	Q9HBR0	1119 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	PDGFC	Q9NRA1	345 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	PLXNA3	P51805	1871 aa		10.91	□□□□□ -0.66
UBE2D3-223	ENST00000508249	POTEB3	A0JP26	581 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	NDUFB10	O96000	172 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	TDO2	P48775	406 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	NT5C2	P49902	561 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	TNFAIP2	Q03169	654 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	TCTN1	Q2MV58	587 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	LEXM	Q3ZCV2	418 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	MCMDC2	Q4G0Z9	681 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	TAPT1	Q6NXT6	567 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	POTEB	Q6S5H4	581 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	TMCO2	Q7Z6W1	182 aa	Predicted RBP	10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	DEFB128	Q7Z7B8	93 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	RPUSD2	Q8IZ73	545 aa	Known RBP	10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	CTAGE1	Q96RT6	745 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	KANSL2	Q9H9L4	492 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	RAVER2	Q9HCJ3	691 aa	Known RBP	10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	GOPC	Q9HD26	462 aa		10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	A1CF	Q9NQ94	594 aa	Known RBP	10.9	□□□□□ -0.66
UBE2D3-223	ENST00000508249	SPTBN4	Q9H254	2564 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ZNF536	O15090	1300 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	TNKS	O95271	1327 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ZMYM6	O95789	1325 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	CACNA1A	O00555	2505 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	IGKV6D-41	A0A0C4DH26	115 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	GSG1L2	A8MUP6	293 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	USP17L12	C9JPN9	530 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	USP17L21	D6R901	530 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249		M0R2C6	588 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PPP4R3B	Q5MIZ7	849 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	CTR9	Q6PD62	1173 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	CPXCR1	Q8N123	301 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PHOSPHO2	Q8TCD6	241 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PPP1R13L	Q8WUF5	828 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RILPL2	Q969X0	211 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	NAPB	Q9H115	298 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	DIAPH3	Q9NSV4	1193 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RALGAPA2	Q2PPJ7	1873 aa		10.89	□□□□□ -0.67
UBE2D3-223	ENST00000508249	APP	P05067	770 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	IQCF3	P0C7M6	154 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	SDS	P20132	328 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RASA1	P20936	1047 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	DEFB103A	P81534	67 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PURA	Q00577	322 aa	Known RBP	10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ALX1	Q15699	326 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	TTC22	Q5TAA0	569 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	HFE2	Q6ZVN8	426 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	FBXO16	Q8IX29	292 aa	Predicted RBP	10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	IFNL3	Q8IZI9	196 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ANKRD35	Q8N283	1001 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PRPF38A	Q8NAV1	312 aa	Known RBP	10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	SEZ6L	Q9BYH1	1024 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	KCNH6	Q9H252	994 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	SUGCT	Q9HAC7	445 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ALG13	Q9NP73	1137 aa	Known RBP	10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	LMCD1	Q9NZU5	365 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ZDBF2	Q9HCK1	2354 aa		10.88	□□□□□ -0.67
UBE2D3-223	ENST00000508249	CCDC171	Q6TFL3	1326 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RAD50	Q92878	1312 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	DNAH14	Q0VDD8	3507 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	DMXL1	Q9Y485	3027 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	GRXCR2	A6NFK2	248 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249		F5H6K3	240 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PITPNM1	O00562	1244 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	DYNC1LI2	O43237	492 aa	Predicted RBP	10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PC	P11498	1178 aa	Known RBP	10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	OAZ1	P54368	228 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	WDR5	P61964	334 aa	Known RBP	10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PDE4B	Q07343	736 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	KLRC3	Q07444	240 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	COL19A1	Q14993	1142 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	CHST13	Q8NET6	341 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PRSS33	Q8NF86	280 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	NEK9	Q8TD19	979 aa		10.87	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms