RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, human

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCOF1-208	ENST00000506063	TTC3	P53804	2025 aa		4.22	□□□□□ -1.73
TCOF1-208	ENST00000506063	SHROOM3	Q8TF72	1996 aa		4.22	□□□□□ -1.73
TCOF1-208	ENST00000506063	MAPK8IP3	Q9UPT6	1336 aa		4.21	□□□□□ -1.73
TCOF1-208	ENST00000506063	ABHD14A-ACY1	A0A1B0GW23	586 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	KRT38	O76015	456 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	NEFM	P07197	916 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	SP9	P0CG40	484 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	DNAJB1	P25685	340 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	NDUFV1	P49821	464 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	RBM10	P98175	930 aa	Known RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	RBL2	Q08999	1139 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	MTMR3	Q13615	1198 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	MBTPS1	Q14703	1052 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	PUM3	Q15397	648 aa	Known RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	FSCN1	Q16658	493 aa	Known RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	TAF7L	Q5H9L4	462 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	VARS2	Q5ST30	1063 aa	Known RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	TATDN1	Q6P1N9	297 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	CNKSR3	Q6P9H4	555 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	UNQ6494/PRO21346	Q6UXR6	183 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	ZNF467	Q7Z7K2	595 aa	Predicted RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	TLK2	Q86UE8	772 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	RIOX2	Q8IUF8	465 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	MAML2	Q8IZL2	1156 aa	Predicted RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	EFHB	Q8N7U6	833 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	MAGEB6	Q8N7X4	407 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	MB21D1	Q8N884	522 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	PPP1R13L	Q8WUF5	828 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	RIN2	Q8WYP3	895 aa	Predicted RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	DHX38	Q92620	1227 aa	Known RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	SAMD11	Q96NU1	681 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	S1PR5	Q9H228	398 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	ABHD16B	Q9H3Z7	469 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	DLGAP2	Q9P1A6	1054 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	ZNF214	Q9UL59	606 aa	Predicted RBP	4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	ADAMTS8	Q9UP79	889 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	PIEZO2	Q9H5I5	2752 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	CFAP46	Q8IYW2	2715 aa		4.21	□□□□□ -1.74
TCOF1-208	ENST00000506063	TEX15	Q9BXT5	2789 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	C2orf16	Q68DN1	1984 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	TM4SF5	O14894	197 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	SLC25A27	O95847	323 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	MMP1	P03956	469 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	SUPT20HL2	P0C7V6	817 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	SMPD1	P17405	629 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	PHKA1	P46020	1223 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	USP14	P54578	494 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	PURA	Q00577	322 aa	Known RBP	4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	MECOM	Q03112	1051 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	LMOD3	Q0VAK6	560 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	KCNC3	Q14003	757 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	PLS1	Q14651	629 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	CCDC6	Q16204	474 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	LRRFIP1	Q32MZ4	808 aa	Known RBP	4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	RABL6	Q3YEC7	729 aa	Predicted RBP	4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	METTL24	Q5JXM2	366 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	BEND3	Q5T5X7	828 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	ARMCX2	Q7L311	632 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	KLHDC4	Q8TBB5	520 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	ATP8B4	Q8TF62	1192 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	DNAAF4	Q8WXU2	420 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	MAP4K1	Q92918	833 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	SUCLG2	Q96I99	432 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	FEZ1	Q99689	392 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	LMAN2L	Q9H0V9	348 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	IGFLR1	Q9H665	355 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	MYH16	Q9H6N6	1097 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	RC3H2	Q9HBD1	1191 aa	Known RBP	4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	SPC25	Q9HBM1	224 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	HOXC10	Q9NYD6	342 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	CDH22	Q9UJ99	828 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	ACACA	Q13085	2346 aa		4.2	□□□□□ -1.74
TCOF1-208	ENST00000506063	SDK1	Q7Z5N4	2213 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	SPTAN1	Q13813	2472 aa	Known RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	POTEM	A6NI47	508 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	C2CD4D	B7Z1M9	353 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	MAP4K4	O95819	1239 aa	Predicted RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	ASGR2	P07307	311 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	IFIT1	P09914	478 aa	Known RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	SP100	P23497	879 aa	Predicted RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	ZEB1	P37275	1124 aa	Predicted RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	RASGRF1	Q13972	1273 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	CCDC30	Q5VVM6	783 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	LARP1B	Q659C4	914 aa	Known RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	SYCE2	Q6PIF2	218 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	POTEG	Q6S5H5	508 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	DZIP1	Q86YF9	867 aa	Known RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	SIAH1	Q8IUQ4	282 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	FOXP4	Q8IVH2	680 aa	Predicted RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	CCDC144CP	Q8IYA2	1237 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	GPR161	Q8N6U8	529 aa	Known RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	ANKRD44	Q8N8A2	993 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	FLCN	Q8NFG4	579 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	LPIN2	Q92539	896 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	GATA6	Q92908	595 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	NSUN4	Q96CB9	384 aa	Known RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	DHX36	Q9H2U1	1008 aa	Known RBP	4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms