RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 MTMR3Q13615 1198 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 KIAA0753Q2KHM9 967 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 HIBCHQ6NVY1 386 aaPredicted RBP14.36□□□□□ -0.11
VEGFA-215ENST00000497139 NFRKBQ6P4R8 1299 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 MPRIPQ6WCQ1 1025 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 CACNA2D4Q7Z3S7 1137 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 CCDC63Q8NA47 563 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 XAGE3Q8WTP9 111 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 TMX4Q9H1E5 349 aaPredicted RBP14.36□□□□□ -0.11
VEGFA-215ENST00000497139 PCDHA13Q9Y5I0 950 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 C5P01031 1676 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 GOLGA6L10A0A0M3HER8 536 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 EME2A4GXA9 379 aaPredicted RBP14.36□□□□□ -0.11
VEGFA-215ENST00000497139 HPDP32754 393 aaPredicted RBP14.36□□□□□ -0.11
VEGFA-215ENST00000497139 RPS6KA3P51812 740 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 GUCY2DQ02846 1103 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 LMNB2Q03252 620 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 CUL1Q13616 776 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 ZNF268Q14587 947 aaPredicted RBP14.36□□□□□ -0.11
VEGFA-215ENST00000497139 PPP1R7Q15435 360 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 QPCTQ16769 361 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 ANKRD13DQ6ZTN6 518 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 CCDC197Q8NCU1 140 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 PSMD1Q99460 953 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 NDST4Q9H3R1 872 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 SKAP2O75563 359 aaPredicted RBP14.35□□□□□ -0.11
VEGFA-215ENST00000497139 TIMM10P62072 90 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 BLMHQ13867 455 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 SLC5A9Q2M3M2 681 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 TMEM67Q5HYA8 995 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 CPLX4Q7Z7G2 160 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 MFN1Q8IWA4 741 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 MTA3Q9BTC8 594 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 NEFHP12036 1026 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 RXRAP19793 462 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 DRD4P21917 467 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 CCND1P24385 295 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 SEPT2Q15019 361 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 PDXDC2PQ6P474 469 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 TBC1D10CQ8IV04 446 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 ADSSL1Q8N142 457 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 RAPGEF5Q92565 580 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 HINFPQ9BQA5 517 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 VPS54Q9P1Q0 977 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 PRAMEF22A3QJZ6 481 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 H0YGN5 161 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 ABLIM1O14639 778 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 XBP1P17861 261 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 CASP1P29466 404 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 CCNG1P51959 295 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 LMBR1LQ6UX01 489 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 FAM114A1Q8IWE2 563 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 TEX9Q8N6V9 391 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 ABTB2Q8N961 1025 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 CASKIN2Q8WXE0 1202 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 IFT81Q8WYA0 676 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 TBC1D31Q96DN5 1066 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 ERGIC2Q96RQ1 377 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.35□□□□□ -0.115e-41■□□□□ 9.6
VEGFA-215ENST00000497139 NUCKS1Q9H1E3 243 aaKnown RBP14.35□□□□□ -0.11
VEGFA-215ENST00000497139 ISCUQ9H1K1 167 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.35□□□□□ -0.11
VEGFA-215ENST00000497139 KCNJ14Q9UNX9 436 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 NFS1Q9Y697 457 aa14.35□□□□□ -0.11
VEGFA-215ENST00000497139 EYA2O00167 538 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 ASAP2O43150 1006 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 MOCS3O95396 460 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 RPN1P04843 607 aaKnown RBP14.34□□□□□ -0.11
VEGFA-215ENST00000497139 MYBP10242 640 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 RAB27AP51159 221 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 TNNC1P63316 161 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 IFI16Q16666 785 aaKnown RBP14.34□□□□□ -0.11
VEGFA-215ENST00000497139 COPS6Q7L5N1 327 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 PARD3BQ8TEW8 1205 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 CHMP6Q96FZ7 201 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 TLR10Q9BXR5 811 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 CABP5Q9NP86 173 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 AGPAT5Q9NUQ2 364 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 PLAGL2Q9UPG8 496 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 A0A087WZG4 1122 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 MPHOSPH10O00566 681 aaKnown RBP14.34□□□□□ -0.11
VEGFA-215ENST00000497139 ZNF263O14978 683 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 MYL1P05976 194 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 FERP16591 822 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 PRCPP42785 496 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 CYP27A1Q02318 531 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 NR5A1Q13285 461 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 KIRREL3Q8IZU9 778 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 SPDYE1Q8NFV5 336 aaPredicted RBP14.34□□□□□ -0.11
VEGFA-215ENST00000497139 THOC1Q96FV9 657 aaKnown RBP14.34□□□□□ -0.11
VEGFA-215ENST00000497139 NOX5Q96PH1 765 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 PUS7LQ9H0K6 701 aaKnown RBP14.34□□□□□ -0.11
VEGFA-215ENST00000497139 SLC5A4Q9NY91 659 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 ADAMTSL3P82987 1691 aa14.34□□□□□ -0.11
VEGFA-215ENST00000497139 A6NHS1 94 aa14.33□□□□□ -0.12
VEGFA-215ENST00000497139 CES2O00748 559 aa14.33□□□□□ -0.12
VEGFA-215ENST00000497139 RTN1Q16799 776 aa14.33□□□□□ -0.12
VEGFA-215ENST00000497139 CNNM2Q9H8M5 875 aa14.33□□□□□ -0.12
VEGFA-215ENST00000497139 FBXO3Q9UK99 471 aa14.33□□□□□ -0.12
VEGFA-215ENST00000497139 CCDC9Q9Y3X0 531 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms