RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FAM43AQ8N2R8 423 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 RPAP3Q9H6T3 665 aaPredicted RBP9.41□□□□□ -0.9
USP54-215ENST00000497106 DTNBO60941 627 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 SLFN14P0C7P3 912 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 COG2Q14746 738 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 PLA2G4DQ86XP0 818 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 PANK2Q9BZ23 570 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 ZNF541Q9H0D2 1346 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 ANKRD31Q8N7Z5 1873 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 CCND2P30279 289 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 OAZ1P54368 228 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 WDR78Q5VTH9 848 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 RASGRP4Q8TDF6 673 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 PGBD1Q96JS3 809 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 GSDMAQ96QA5 445 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 ZNF408Q9H9D4 720 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 SLX4Q8IY92 1834 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 EPS15P42566 896 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 BACE1P56817 501 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 MYL5Q02045 173 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 FUT2Q10981 343 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 MTMR2Q13614 643 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 DNTTIP2Q5QJE6 756 aaKnown RBP9.4□□□□□ -0.9
USP54-215ENST00000497106 TTBK2Q6IQ55 1244 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 NEK9Q8TD19 979 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 ZHX3Q9H4I2 956 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 SERTAD1Q9UHV2 236 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 DNM3Q9UQ16 869 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 IVNS1ABPQ9Y6Y0 642 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 GAS7O60861 476 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 GSDMDP57764 484 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.4□□□□□ -0.9
USP54-215ENST00000497106 DNAJC25Q9H1X3 360 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 GJB4Q9NTQ9 266 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 FBXO2Q9UK22 296 aaPredicted RBP9.4□□□□□ -0.9
USP54-215ENST00000497106 SAMM50Q9Y512 469 aa9.4□□□□□ -0.9
USP54-215ENST00000497106 PRR16Q569H4 304 aa9.4□□□□□ -0.91
USP54-215ENST00000497106 MYPNQ86TC9 1320 aa9.4□□□□□ -0.91
USP54-215ENST00000497106 ERO1BQ86YB8 467 aa9.4□□□□□ -0.91
USP54-215ENST00000497106 TACC3Q9Y6A5 838 aa9.4□□□□□ -0.91
USP54-215ENST00000497106 BIN1O00499 593 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 CXCL11O14625 94 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 DDNO94850 711 aaPredicted RBP9.39□□□□□ -0.91
USP54-215ENST00000497106 ICAM1P05362 532 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 PDIA5Q14554 519 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 LDHDQ86WU2 507 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 FMR1NBQ8N0W7 255 aaPredicted RBP9.39□□□□□ -0.91
USP54-215ENST00000497106 NUP88Q99567 741 aaPredicted RBP9.39□□□□□ -0.91
USP54-215ENST00000497106 COL11A2P13942 1736 aaPredicted RBP9.39□□□□□ -0.91
USP54-215ENST00000497106 UNCXA6NJT0 531 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 NOVP48745 357 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 UBE2SQ16763 222 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 SMCR8Q8TEV9 937 aaPredicted RBP9.39□□□□□ -0.91
USP54-215ENST00000497106 PCMTD1Q96MG8 357 aaPredicted RBP9.39□□□□□ -0.91
USP54-215ENST00000497106 CLIC6Q96NY7 704 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 TAF1P21675 1872 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 IDEP14735 1019 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 HS1BP3Q53T59 392 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 NBPF12Q5TAG4 269 aaPredicted RBP9.39□□□□□ -0.91
USP54-215ENST00000497106 NCAPH2Q6IBW4 605 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 SH3BP5LQ7L8J4 393 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 CLEC10AQ8IUN9 316 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 FTOQ9C0B1 505 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP54-215ENST00000497106 ACAD9Q9H845 621 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 FKBP1BP68106 108 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 ARHGAP4P98171 946 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 SNAPC2Q13487 334 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 NOL9Q5SY16 702 aaKnown RBP9.39□□□□□ -0.91
USP54-215ENST00000497106 RNF207Q6ZRF8 634 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 SLC51AQ86UW1 340 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 CHST13Q8NET6 341 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 SGIP1Q9BQI5 828 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 CCSER1Q9C0I3 900 aa9.39□□□□□ -0.91
USP54-215ENST00000497106 FSD2A1L4K1 749 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 IPO7O95373 1038 aaKnown RBP9.38□□□□□ -0.91
USP54-215ENST00000497106 TECP42680 631 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 FKBP15Q5T1M5 1219 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 PPFIBP1Q86W92 1011 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 ZBED3Q96IU2 234 aaPredicted RBP9.38□□□□□ -0.91
USP54-215ENST00000497106 TEX13BQ9BXU2 312 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 CPVLQ9H3G5 476 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 GLTPD2A6NH11 291 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 PTPAQ15257 358 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 ANKRD35Q8N283 1001 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 RANBP17Q9H2T7 1088 aaKnown RBP9.38□□□□□ -0.91
USP54-215ENST00000497106 PPP1R9AQ9ULJ8 1098 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 SLC25A27O95847 323 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 PPATQ06203 517 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 KCTD2Q14681 263 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 MIER3Q7Z3K6 550 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 AOPEPQ8N6M6 819 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 SLC17A8Q8NDX2 589 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 TRERF1Q96PN7 1200 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 DISC1Q9NRI5 854 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 HOMER2Q9NSB8 354 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 PCDHAC2Q9Y5I4 1007 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 LAMB1P07942 1786 aa9.38□□□□□ -0.91
USP54-215ENST00000497106 STAM2O75886 525 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 FAM13AO94988 1023 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 MYCLP12524 364 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms