RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 TTI2Q6NXR4 508 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 IRF2BP1Q8IU81 584 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 CSGALNACT2Q8N6G5 542 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 LRRC15Q8TF66 581 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 P2RX5Q93086 422 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 AKT1S1Q96B36 256 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 ZDHHC15Q96MV8 337 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 WDR24Q96S15 920 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 MRIQ9BWK5 157 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 LRRC27Q9C0I9 530 aa12.41□□□□□ -0.42
CMSS1-208ENST00000496116 MRPL44Q9H9J2 332 aaKnown RBP12.41□□□□□ -0.42
CMSS1-208ENST00000496116 GREB1LQ9C091 1923 aaPredicted RBP12.4□□□□□ -0.42
CMSS1-208ENST00000496116 PES1O00541 588 aaKnown RBP12.4□□□□□ -0.42
CMSS1-208ENST00000496116 ZBTB5O15062 677 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 FANCGO15287 622 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 MMP10P09238 476 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 HOXA7P31268 230 aaPredicted RBP12.4□□□□□ -0.42
CMSS1-208ENST00000496116 KRT9P35527 623 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 DNM2P50570 870 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 MAP3K9P80192 1104 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 CBX1P83916 185 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 COBLL1Q53SF7 1204 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 PPP4R3AQ6IN85 833 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 FBXO38Q6PIJ6 1188 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 CLEC10AQ8IUN9 316 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 MB21D1Q8N884 522 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 NAP1L4Q99733 375 aaKnown RBP12.4□□□□□ -0.42
CMSS1-208ENST00000496116 MMTAG2Q9BU76 263 aaKnown RBP12.4□□□□□ -0.42
CMSS1-208ENST00000496116 GLT8D2Q9H1C3 349 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 LZTFL1Q9NQ48 299 aa12.4□□□□□ -0.42
CMSS1-208ENST00000496116 ARGLU1Q9NWB6 273 aaPredicted RBP12.4□□□□□ -0.42
CMSS1-208ENST00000496116 TNNI2P48788 182 aa12.4□□□□□ -0.43
CMSS1-208ENST00000496116 FKBP1AP62942 108 aaKnown RBP12.4□□□□□ -0.43
CMSS1-208ENST00000496116 TSR1Q2NL82 804 aaKnown RBP12.4□□□□□ -0.43
CMSS1-208ENST00000496116 ARHGAP29Q52LW3 1261 aa12.4□□□□□ -0.43
CMSS1-208ENST00000496116 KRT79Q5XKE5 535 aa12.4□□□□□ -0.43
CMSS1-208ENST00000496116 LARP4BQ92615 738 aaKnown RBP12.4□□□□□ -0.43
CMSS1-208ENST00000496116 ZNF622Q969S3 477 aaKnown RBP eCLIP12.4□□□□□ -0.43
CMSS1-208ENST00000496116 KIFC2Q96AC6 838 aa12.4□□□□□ -0.43
CMSS1-208ENST00000496116 CARD6Q9BX69 1037 aa12.4□□□□□ -0.43
CMSS1-208ENST00000496116 DDX41Q9UJV9 622 aaKnown RBP12.4□□□□□ -0.43
CMSS1-208ENST00000496116 MRFAP1Q9Y605 127 aa12.4□□□□□ -0.43
CMSS1-208ENST00000496116 COL11A2P13942 1736 aaPredicted RBP12.4□□□□□ -0.43
CMSS1-208ENST00000496116 PVALEFA0A1B0GWK0 134 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 SPDYE4A6NLX3 237 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 SLC37A4O43826 429 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 TDP2O95551 362 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 GCFC2P16383 781 aaKnown RBP12.39□□□□□ -0.43
CMSS1-208ENST00000496116 CLK2P49760 499 aaKnown RBP12.39□□□□□ -0.43
CMSS1-208ENST00000496116 HDLBPQ00341 1268 aaKnown RBP12.39□□□□□ -0.43
CMSS1-208ENST00000496116 NFIAQ12857 509 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 STK4Q13043 487 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 STRIP1Q5VSL9 837 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 TUBGCP2Q9BSJ2 902 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 TRIM34Q9BYJ4 488 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 DBNDD1Q9H9R9 158 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 LUC7L2Q9Y383 392 aaKnown RBP12.39□□□□□ -0.43
CMSS1-208ENST00000496116 ADAMTSL1Q8N6G6 1762 aa12.39□□□□□ -0.43
CMSS1-208ENST00000496116 TADA3O75528 432 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 GRB10Q13322 594 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 UNC13DQ70J99 1090 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 KCTD1Q719H9 257 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 SMAP1Q8IYB5 467 aaPredicted RBP12.38□□□□□ -0.43
CMSS1-208ENST00000496116 LRRN4CLQ8ND94 238 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 OR8K1Q8NGG5 319 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 ZNF507Q8TCN5 953 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 MTMR8Q96EF0 704 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 NUP58Q9BVL2 599 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 PSTPIP2Q9H939 334 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 PI4KBQ9UBF8 816 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 MARCH6O60337 910 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 APBA3O96018 575 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 H2AFXP16104 143 aaPredicted RBP12.38□□□□□ -0.43
CMSS1-208ENST00000496116 RBM5P52756 815 aaKnown RBP eCLIP12.38□□□□□ -0.43
CMSS1-208ENST00000496116 ERVK-24P63145 666 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 PPP2R3AQ06190 1150 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 TUBB2AQ13885 445 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 TTBK2Q6IQ55 1244 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 RETREG2Q8NC44 543 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 SNX29Q8TEQ0 813 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 DUSP9Q99956 384 aaKnown RBP12.38□□□□□ -0.43
CMSS1-208ENST00000496116 TUBB2BQ9BVA1 445 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 IDI2Q9BXS1 227 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 KANSL2Q9H9L4 492 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 MYO1AQ9UBC5 1043 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 DDX25Q9UHL0 483 aaKnown RBP12.38□□□□□ -0.43
CMSS1-208ENST00000496116 CAPN11Q9UMQ6 739 aa12.38□□□□□ -0.43
CMSS1-208ENST00000496116 POTEMA6NI47 508 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 USP17L10C9JJH3 530 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 PPP1R11O60927 126 aaPredicted RBP12.37□□□□□ -0.43
CMSS1-208ENST00000496116 FCER1AP12319 257 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 SLC16A2P36021 539 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 SLC1A4P43007 532 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 UBE2SQ16763 222 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 CERKLQ49MI3 558 aaPredicted RBP12.37□□□□□ -0.43
CMSS1-208ENST00000496116 ANKRD40Q6AI12 368 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 KIAA0825Q8IV33 1275 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 DCAF4Q8WV16 495 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 MKL1Q969V6 931 aa12.37□□□□□ -0.43
CMSS1-208ENST00000496116 CNOT6LQ96LI5 555 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms