RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 CYP26A1O43174 497 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 RAG1P15918 1043 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 ATF4P18848 351 aaPredicted RBP8.84□□□□□ -0.99
VIM-207ENST00000495528 COL9A2Q14055 689 aaPredicted RBP8.84□□□□□ -0.99
VIM-207ENST00000495528 NBPF6Q5VWK0 638 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 ARHGAP27Q6ZUM4 889 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 SLFN12Q8IYM2 578 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 FAM181AQ8N9Y4 354 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 ATG4CQ96DT6 458 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 NBPF4Q96M43 638 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 TESK2Q96S53 571 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 CRBNQ96SW2 442 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 PIM2Q9P1W9 311 aa8.84□□□□□ -0.99
VIM-207ENST00000495528 ST20-MTHFSA0A0A6YYL1 179 aa8.83□□□□□ -1
VIM-207ENST00000495528 YBX3P16989 372 aaKnown RBP eCLIP8.83□□□□□ -14e-7■□□□□ 10
VIM-207ENST00000495528 POLR2BP30876 1174 aaKnown RBP8.83□□□□□ -1
VIM-207ENST00000495528 HOXA10P31260 410 aaPredicted RBP8.83□□□□□ -1
VIM-207ENST00000495528 RRS1Q15050 365 aaKnown RBP8.83□□□□□ -1
VIM-207ENST00000495528 USHBP1Q8N6Y0 703 aa8.83□□□□□ -1
VIM-207ENST00000495528 CYB5D2Q8WUJ1 264 aa8.83□□□□□ -1
VIM-207ENST00000495528 TMEM40Q8WWA1 233 aa8.83□□□□□ -1
VIM-207ENST00000495528 SEC16BQ96JE7 1060 aa8.83□□□□□ -1
VIM-207ENST00000495528 HEXIM2Q96MH2 286 aaKnown RBP8.83□□□□□ -1
VIM-207ENST00000495528 SRRTQ9BXP5 876 aaKnown RBP8.83□□□□□ -1
VIM-207ENST00000495528 USP54Q70EL1 1684 aa8.83□□□□□ -1
VIM-207ENST00000495528 LTN1O94822 1766 aa8.83□□□□□ -1
VIM-207ENST00000495528 CNTNAP4Q9C0A0 1308 aa8.82□□□□□ -1
VIM-207ENST00000495528 IMPDH2P12268 514 aa8.82□□□□□ -1
VIM-207ENST00000495528 GBP1P32455 592 aa8.82□□□□□ -1
VIM-207ENST00000495528 ARID5AQ03989 594 aa8.82□□□□□ -1
VIM-207ENST00000495528 LRRFIP1Q32MZ4 808 aaKnown RBP8.82□□□□□ -1
VIM-207ENST00000495528 RUFY4Q6ZNE9 571 aa8.82□□□□□ -1
VIM-207ENST00000495528 NLRC3Q7RTR2 1065 aa8.82□□□□□ -1
VIM-207ENST00000495528 CCDC74BQ96LY2 380 aa8.82□□□□□ -1
VIM-207ENST00000495528 PRDM5Q9NQX1 630 aaPredicted RBP8.82□□□□□ -1
VIM-207ENST00000495528 U3KQE9 123 aa8.82□□□□□ -1
VIM-207ENST00000495528 MEGF6O75095 1541 aa8.81□□□□□ -1
VIM-207ENST00000495528 FYB1O15117 783 aa8.81□□□□□ -1
VIM-207ENST00000495528 CBX7O95931 251 aa8.81□□□□□ -1
VIM-207ENST00000495528 ITIH2P19823 946 aa8.81□□□□□ -1
VIM-207ENST00000495528 EIF6P56537 245 aaKnown RBP8.81□□□□□ -1
VIM-207ENST00000495528 PPP1R13LQ8WUF5 828 aa8.81□□□□□ -1
VIM-207ENST00000495528 ANAPC16Q96DE5 110 aa8.81□□□□□ -1
VIM-207ENST00000495528 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.81□□□□□ -1
VIM-207ENST00000495528 CNNM2Q9H8M5 875 aa8.81□□□□□ -1
VIM-207ENST00000495528 GTF2IRD1Q9UHL9 959 aa8.81□□□□□ -1
VIM-207ENST00000495528 CEP131Q9UPN4 1083 aa8.81□□□□□ -1
VIM-207ENST00000495528 MRVI1Q9Y6F6 885 aa8.81□□□□□ -1
VIM-207ENST00000495528 CHD4Q14839 1912 aa8.81□□□□□ -1
VIM-207ENST00000495528 USP47Q96K76 1375 aa8.81□□□□□ -1
VIM-207ENST00000495528 SSBP05455 408 aaKnown RBP eCLIP8.8□□□□□ -1
VIM-207ENST00000495528 FOSL1P15407 271 aa8.8□□□□□ -1
VIM-207ENST00000495528 NME1P15531 152 aaKnown RBP8.8□□□□□ -1
VIM-207ENST00000495528 SSTR4P31391 388 aa8.8□□□□□ -1
VIM-207ENST00000495528 CHMP4BP1P59074 171 aa8.8□□□□□ -1
VIM-207ENST00000495528 HSP90AB2PQ58FF8 381 aa8.8□□□□□ -1
VIM-207ENST00000495528 CDCP2Q5VXM1 449 aa8.8□□□□□ -1
VIM-207ENST00000495528 FAM214BQ7L5A3 538 aa8.8□□□□□ -1
VIM-207ENST00000495528 LSRQ86X29 649 aaPredicted RBP8.8□□□□□ -1
VIM-207ENST00000495528 DNAJB8Q8NHS0 232 aa8.8□□□□□ -1
VIM-207ENST00000495528 RAPGEF4Q8WZA2 1011 aa8.8□□□□□ -1
VIM-207ENST00000495528 RNF112Q9ULX5 631 aa8.8□□□□□ -1
VIM-207ENST00000495528 TONSLQ96HA7 1378 aa8.8□□□□□ -1
VIM-207ENST00000495528 MEIS3P2A8K0S8 358 aa8.79□□□□□ -1
VIM-207ENST00000495528 ZMYM1Q5SVZ6 1142 aa8.79□□□□□ -1
VIM-207ENST00000495528 SFRP5Q5T4F7 317 aa8.79□□□□□ -1
VIM-207ENST00000495528 SMIM5Q71RC9 77 aa8.79□□□□□ -1
VIM-207ENST00000495528 ZC3H7BQ9UGR2 993 aaKnown RBP8.79□□□□□ -1
VIM-207ENST00000495528 CD2APQ9Y5K6 639 aa8.79□□□□□ -1
VIM-207ENST00000495528 CGNL1Q0VF96 1302 aa8.79□□□□□ -1
VIM-207ENST00000495528 CLSPNQ9HAW4 1339 aa8.79□□□□□ -1
VIM-207ENST00000495528 FAM208AQ9UK61 1670 aaKnown RBP8.78□□□□□ -1
VIM-207ENST00000495528 RTL1A6NKG5 1358 aa8.78□□□□□ -1
VIM-207ENST00000495528 COL24A1Q17RW2 1714 aa8.78□□□□□ -1
VIM-207ENST00000495528 GNAT3A8MTJ3 354 aa8.78□□□□□ -1
VIM-207ENST00000495528 PRR33A8MZF0 331 aa8.78□□□□□ -1
VIM-207ENST00000495528 RGS13O14921 159 aa8.78□□□□□ -1
VIM-207ENST00000495528 CYP27B1O15528 508 aa8.78□□□□□ -1
VIM-207ENST00000495528 UBOX5O94941 541 aa8.78□□□□□ -1
VIM-207ENST00000495528 GRIK1P39086 918 aa8.78□□□□□ -1
VIM-207ENST00000495528 ETV3P41162 512 aa8.78□□□□□ -1
VIM-207ENST00000495528 CPSF6Q16630 551 aaKnown RBP eCLIP8.78□□□□□ -1
VIM-207ENST00000495528 ZNF746Q6NUN9 644 aaPredicted RBP8.78□□□□□ -1
VIM-207ENST00000495528 AMIGO3Q86WK7 504 aa8.78□□□□□ -1
VIM-207ENST00000495528 SLC43A3Q8NBI5 491 aa8.78□□□□□ -1
VIM-207ENST00000495528 FLAD1Q8NFF5 587 aa8.78□□□□□ -1
VIM-207ENST00000495528 SLC9A7Q96T83 725 aa8.78□□□□□ -1
VIM-207ENST00000495528 QSER1Q2KHR3 1735 aa8.77□□□□□ -1
VIM-207ENST00000495528 PALLDQ8WX93 1383 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 COBLO75128 1261 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 MED26O95402 600 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 ACRP10323 421 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 CYP7A1P22680 504 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 GIPRP48546 466 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 OXCT1P55809 520 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 TMF1P82094 1093 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 PPP2R5EQ16537 467 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 MCF2L2Q86YR7 1114 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 PLD6Q8N2A8 252 aaKnown RBP8.77□□□□□ -1.01
VIM-207ENST00000495528 RBBP8NLQ8NC74 664 aaPredicted RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms