RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 ADGRF4Q8IZF3 695 aa12.55□□□□□ -0.4
CHMP3-209ENST00000494623 ZNF507Q8TCN5 953 aa12.55□□□□□ -0.4
CHMP3-209ENST00000494623 CDK5RAP2Q96SN8 1893 aa12.55□□□□□ -0.4
CHMP3-209ENST00000494623 MYH1P12882 1939 aa12.55□□□□□ -0.4
CHMP3-209ENST00000494623 SEC31AO94979 1220 aaKnown RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 MCM6Q14566 821 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 TSR1Q2NL82 804 aaKnown RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 DYMQ7RTS9 669 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 CDK5RAP3Q96JB5 506 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 PCMTD1Q96MG8 357 aaPredicted RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 MTMR9Q96QG7 549 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 QTRT2Q9H974 415 aaKnown RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 JMJD4Q9H9V9 463 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 FAM53CQ9NYF3 392 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 FHOD1Q9Y613 1164 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 EPN1Q9Y6I3 576 aaPredicted RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 BICDL2A1A5D9 508 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 EDIL3O43854 480 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 MTIF2P46199 727 aaKnown RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 KLK7P49862 253 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 DNM2P50570 870 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 TBC1D8BQ0IIM8 1120 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 GRB10Q13322 594 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 CCDC96Q2M329 555 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 CDC42EP5Q6NZY7 148 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 KCTD1Q719H9 257 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 RSRC2Q7L4I2 434 aaKnown RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 GPR161Q8N6U8 529 aaKnown RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 NOC3LQ8WTT2 800 aaKnown RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 GOLGA1Q92805 767 aa12.54□□□□□ -0.4
CHMP3-209ENST00000494623 GTPBP4Q9BZE4 634 aaKnown RBP12.54□□□□□ -0.4
CHMP3-209ENST00000494623 IGKV6D-41A0A0C4DH26 115 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 A0A1W2PQC6 194 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 CTAGE9A4FU28 777 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 POTEMA6NI47 508 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 SEMA3FQ13275 785 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 TMEM266Q2M3C6 531 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 TMC4Q7Z404 712 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 PROM2Q8N271 834 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 CNOT6LQ96LI5 555 aaKnown RBP12.53□□□□□ -0.4
CHMP3-209ENST00000494623 PNMA5Q96PV4 448 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 UIMC1Q96RL1 719 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 NUDT12Q9BQG2 462 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 PARD6BQ9BYG5 372 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 ST7Q9NRC1 585 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 CAPN11Q9UMQ6 739 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 MYH8P13535 1937 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 PNMA6FA0A0J9YX94 578 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 MYMKA6NI61 221 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 USP17L10C9JJH3 530 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 hCG_1984214I3L0E3 225 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 MARCH6O60337 910 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 PPP1R11O60927 126 aaPredicted RBP12.53□□□□□ -0.4
CHMP3-209ENST00000494623 NDUFA10O95299 355 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 SNHG28P0DPA3 235 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 SHMT1P34896 483 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 ARHGAP25P42331 645 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 ZNF543Q08ER8 600 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 CNNM4Q6P4Q7 775 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 ZNF713Q8N859 430 aaPredicted RBP12.53□□□□□ -0.4
CHMP3-209ENST00000494623 KIAA0895Q8NCT3 520 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 GJA10Q969M2 543 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 NOC4LQ9BVI4 516 aaKnown RBP12.53□□□□□ -0.4
CHMP3-209ENST00000494623 BLOC1S4Q9NUP1 217 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 AGPAT5Q9NUQ2 364 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 CDC23Q9UJX2 597 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 SUGT1Q9Y2Z0 365 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 PNMA6AP0CW24 399 aaPredicted RBP12.53□□□□□ -0.4
CHMP3-209ENST00000494623 SRGNP10124 158 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 TRIM21P19474 475 aaKnown RBP12.53□□□□□ -0.4
CHMP3-209ENST00000494623 NFIAQ12857 509 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 ZFPM1Q8IX07 1006 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 SEMA6BQ9H3T3 888 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 KCNQ5Q9NR82 932 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 TRIM10Q9UDY6 481 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 SWAP70Q9UH65 585 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 GUCA1BQ9UMX6 200 aa12.53□□□□□ -0.4
CHMP3-209ENST00000494623 UBR3Q6ZT12 1888 aa12.52□□□□□ -0.4
CHMP3-209ENST00000494623 NKRFO15226 690 aaKnown RBP eCLIP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 ZRANB2O95218 330 aaKnown RBP eCLIP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 TFRCP02786 760 aaKnown RBP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 IDEP14735 1019 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 CHMP4BP1P59074 171 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 ORC2Q13416 577 aaPredicted RBP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 SRGAP1Q7Z6B7 1085 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 SNX29Q8TEQ0 813 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 RABGGTAQ92696 567 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 TFR2Q9UP52 801 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 REXO2Q9Y3B8 237 aaKnown RBP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 HLA-DOAP06340 250 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 FXR2P51116 673 aaKnown RBP eCLIP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 CACNB3P54284 484 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 TCP10Q12799 353 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 KRT79Q5XKE5 535 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 APOBEC3HQ6NTF7 200 aaKnown RBP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 WDR59Q6PJI9 974 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 FAM114A1Q8IWE2 563 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 LARP4BQ92615 738 aaKnown RBP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 TEKT1Q969V4 418 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 DNAJC7Q99615 494 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms