RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ARHGEF15O94989 841 aa16.96■□□□□ 0.31
PRPF40A-211ENST00000493468 CPT1AP50416 773 aa16.96■□□□□ 0.31
PRPF40A-211ENST00000493468 GRB10Q13322 594 aa16.96■□□□□ 0.31
PRPF40A-211ENST00000493468 STAG1Q8WVM7 1258 aa16.96■□□□□ 0.31
PRPF40A-211ENST00000493468 SIP14410 1827 aa16.96■□□□□ 0.3
PRPF40A-211ENST00000493468 TRIP12Q14669 1992 aaPredicted RBP16.95■□□□□ 0.3
PRPF40A-211ENST00000493468 TMEM63BQ5T3F8 832 aa16.95■□□□□ 0.3
PRPF40A-211ENST00000493468 NFRKBQ6P4R8 1299 aa16.95■□□□□ 0.3
PRPF40A-211ENST00000493468 KIAA1211Q6ZU35 1233 aa16.95■□□□□ 0.3
PRPF40A-211ENST00000493468 EEPD1Q7L9B9 569 aa16.95■□□□□ 0.3
PRPF40A-211ENST00000493468 STK11IPQ8N1F8 1099 aa16.95■□□□□ 0.3
PRPF40A-211ENST00000493468 NEDD1Q8NHV4 660 aa16.95■□□□□ 0.3
PRPF40A-211ENST00000493468 MTG1Q9BT17 334 aaPredicted RBP16.95■□□□□ 0.3
PRPF40A-211ENST00000493468 EPB41L4AQ9HCS5 686 aaPredicted RBP16.95■□□□□ 0.3
PRPF40A-211ENST00000493468 RBM47A0AV96 593 aaKnown RBP16.94■□□□□ 0.3
PRPF40A-211ENST00000493468 IQCF3P0C7M6 154 aa16.94■□□□□ 0.3
PRPF40A-211ENST00000493468 ALAS1P13196 640 aa16.94■□□□□ 0.3
PRPF40A-211ENST00000493468 GNAT2P19087 354 aa16.94■□□□□ 0.3
PRPF40A-211ENST00000493468 PTPN11Q06124 597 aaPredicted RBP16.94■□□□□ 0.3
PRPF40A-211ENST00000493468 SIRT2Q8IXJ6 389 aa16.94■□□□□ 0.3
PRPF40A-211ENST00000493468 DDX49Q9Y6V7 483 aaKnown RBP16.94■□□□□ 0.3
PRPF40A-211ENST00000493468 FAM86C2PA6NEL3 165 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 PRR33A8MZF0 331 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 PRDM1O75626 825 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 SLC1A4P43007 532 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 BFSP2Q13515 415 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 LRRFIP1Q32MZ4 808 aaKnown RBP16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 MUM1L1Q5H9M0 696 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 PPP4R3BQ5MIZ7 849 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 RETREG2Q8NC44 543 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 PANK1Q8TE04 598 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 APPBP2Q92624 585 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 WDR11Q9BZH6 1224 aa16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 ADD3Q9UEY8 706 aaKnown RBP16.93■□□□□ 0.3
PRPF40A-211ENST00000493468 KPNA6O60684 536 aa16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 TSPY3P0CV98 308 aa16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 TSPY8P0CW00 308 aa16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 TDO2P48775 406 aa16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 IKQ13123 557 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 NBPF20Q3BBV1 942 aa16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 BRDTQ58F21 947 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 KBTBD3Q8NAB2 608 aa16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 OSBP2Q969R2 916 aa16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 FTOQ9C0B1 505 aaKnown RBP eCLIP16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 CD320Q9NPF0 282 aa16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 GPHNQ9NQX3 736 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 RAD50Q92878 1312 aa16.92■□□□□ 0.3
PRPF40A-211ENST00000493468 NKRFO15226 690 aaKnown RBP eCLIP16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 GPAA1O43292 621 aa16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 MYL3P08590 195 aa16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 KCNJ6P48051 423 aa16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 ALDH5A1P51649 535 aaPredicted RBP16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 PDE4BQ07343 736 aa16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 NSMFQ6X4W1 530 aa16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 CCPG1Q9ULG6 757 aa16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 PRR12Q9ULL5 1215 aa16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 ISY1Q9ULR0 285 aaKnown RBP16.91■□□□□ 0.3
PRPF40A-211ENST00000493468 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 A6NJR5 290 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 ICAM1P05362 532 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 ZFYP08048 801 aaPredicted RBP16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 MS4A1P11836 297 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 MCCP23508 829 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 LEXMQ3ZCV2 418 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 FAM47CQ5HY64 1035 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 RCSD1Q6JBY9 416 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 OR6J1Q8NGC5 347 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 CAGE1Q8TC20 777 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 AFAP1L1Q8TED9 768 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 BCL11AQ9H165 835 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 UBE2ZQ9H832 354 aaPredicted RBP16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 ZBTB40Q9NUA8 1239 aa16.9■□□□□ 0.3
PRPF40A-211ENST00000493468 RNF113AO15541 343 aaKnown RBP16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 PARNO95453 639 aaKnown RBP16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 WDR5P61964 334 aaKnown RBP16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 TFAP4Q01664 338 aa16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 SPRED2Q7Z698 418 aa16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 ALYREFQ86V81 257 aaKnown RBP16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 FAM178BQ8IXR5 827 aa16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 CCDC155Q8N6L0 562 aa16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 GDPD5Q8WTR4 605 aa16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 DDX19BQ9UMR2 479 aa16.89■□□□□ 0.29
PRPF40A-211ENST00000493468 LCHNA4D1U4 455 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 PATL2C9JE40 543 aaKnown RBP16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 SLC3A2P08195 630 aaKnown RBP16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 ERVK-21P61565 698 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 PPP2R5BQ15173 497 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 KCTD1Q719H9 257 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 IFNL3Q8IZI9 196 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 GJD3Q8N144 294 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 PURBQ96QR8 312 aaKnown RBP16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 NACAP1Q9BZK3 213 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 LRRCC1Q9C099 1032 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 KCNH6Q9H252 994 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 RANBP17Q9H2T7 1088 aaKnown RBP16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 ECHDC1Q9NTX5 307 aa16.88■□□□□ 0.29
PRPF40A-211ENST00000493468 APPP05067 770 aa16.87■□□□□ 0.29
PRPF40A-211ENST00000493468 ALADP13716 330 aa16.87■□□□□ 0.29
PRPF40A-211ENST00000493468 RBL2Q08999 1139 aa16.87■□□□□ 0.29
PRPF40A-211ENST00000493468 BAATQ14032 418 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms