RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 GRIK1P39086 918 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 LSSP48449 732 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 ERVK-21P61565 698 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 OCRLQ01968 901 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 SRSF11Q05519 484 aaKnown RBP5.98□□□□□ -1.45
VPS13A-212ENST00000493341 KLF1Q13351 362 aaPredicted RBP5.98□□□□□ -1.45
VPS13A-212ENST00000493341 IL31Q6EBC2 164 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 FBXO11Q86XK2 927 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 CPA6Q8N4T0 437 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 FRS2Q8WU20 508 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 COPS5Q92905 334 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 ALG1Q9BT22 464 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 MCMBPQ9BTE3 642 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 CHST7Q9NS84 486 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 C14orf119Q9NWQ9 140 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 TPX2Q9ULW0 747 aaKnown RBP5.98□□□□□ -1.45
VPS13A-212ENST00000493341 CCDC189A1A4V9 331 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 C2orf71A6NGG8 1288 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 ARVCFO00192 962 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 IFRD1O00458 451 aaPredicted RBP5.98□□□□□ -1.45
VPS13A-212ENST00000493341 PRAMEF1O95521 474 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 ATP2A2P16615 1042 aaKnown RBP5.98□□□□□ -1.45
VPS13A-212ENST00000493341 GPR85P60893 370 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 FAPQ12884 760 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 PAK1Q13153 545 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 RALBP1Q15311 655 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 LONRF3Q496Y0 759 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 TMEM177Q53S58 311 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 CLIP3Q96DZ5 547 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 ZFYVE21Q9BQ24 234 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 NXF1Q9UBU9 619 aaKnown RBP5.98□□□□□ -1.45
VPS13A-212ENST00000493341 TMEFF2Q9UIK5 374 aaPredicted RBP5.98□□□□□ -1.45
VPS13A-212ENST00000493341 INTUQ9ULD6 942 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 RNF112Q9ULX5 631 aa5.98□□□□□ -1.45
VPS13A-212ENST00000493341 WASHC2AQ641Q2 1341 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.97□□□□□ -1.45
VPS13A-212ENST00000493341 PTPDC1A2A3K4 754 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 SHISA8B8ZZ34 492 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 MEFVO15553 781 aaPredicted RBP5.97□□□□□ -1.45
VPS13A-212ENST00000493341 MSCO60682 206 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 RECQLP46063 649 aaPredicted RBP5.97□□□□□ -1.45
VPS13A-212ENST00000493341 DGKGP49619 791 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 DNM2P50570 870 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 NEK3P51956 506 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 PURAQ00577 322 aaKnown RBP5.97□□□□□ -1.45
VPS13A-212ENST00000493341 PICALMQ13492 652 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 DDB1Q16531 1140 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 INAVAQ3KP66 663 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 RSPO2Q6UXX9 243 aaPredicted RBP5.97□□□□□ -1.45
VPS13A-212ENST00000493341 Q6ZNB5 142 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 C11orf96Q7Z7L8 435 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 FMR1NBQ8N0W7 255 aaPredicted RBP5.97□□□□□ -1.45
VPS13A-212ENST00000493341 CHST14Q8NCH0 376 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 CLRN3Q8NCR9 226 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 PCDH19Q8TAB3 1148 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 SLC13A1Q9BZW2 595 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 ASCC2Q9H1I8 757 aaPredicted RBP5.97□□□□□ -1.45
VPS13A-212ENST00000493341 GPR27Q9NS67 375 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 PRR13Q9NZ81 148 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 H2AFY2Q9P0M6 372 aaPredicted RBP5.97□□□□□ -1.45
VPS13A-212ENST00000493341 USP25Q9UHP3 1055 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 RCAN3Q9UKA8 241 aa5.97□□□□□ -1.45
VPS13A-212ENST00000493341 A0A0A0MRY4 1105 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.96□□□□□ -1.45
VPS13A-212ENST00000493341 K7ESF4 209 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 SIGLEC6O43699 453 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 ADAMTS2O95450 1211 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 FOSP01100 380 aaPredicted RBP5.96□□□□□ -1.45
VPS13A-212ENST00000493341 CKMP06732 381 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 TRIM27P14373 513 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 USP11P51784 963 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 RAC1P63000 192 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 ARHGAP29Q52LW3 1261 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 GPAT2Q6NUI2 795 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 CCDC103Q8IW40 242 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 AGGF1Q8N302 714 aaeCLIP5.96□□□□□ -1.45
VPS13A-212ENST00000493341 FAXDC2Q96IV6 333 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 SARGQ9BW04 601 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 CELF4Q9BZC1 486 aaKnown RBP5.96□□□□□ -1.45
VPS13A-212ENST00000493341 TCF7L1Q9HCS4 588 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 PRDM10Q9NQV6 1147 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 MKS1Q9NXB0 559 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 B4GALT6Q9UBX8 382 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 PNMA8BQ9ULN7 279 aaPredicted RBP5.96□□□□□ -1.45
VPS13A-212ENST00000493341 NPFFR2Q9Y5X5 522 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 ST14Q9Y5Y6 855 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 BACE2Q9Y5Z0 518 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 MRFAP1Q9Y605 127 aa5.96□□□□□ -1.45
VPS13A-212ENST00000493341 ARNTLO00327 626 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 OIP5O43482 229 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 SOD2P04179 222 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 LCP1P13796 627 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 CYP7A1P22680 504 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 CYP2C19P33261 490 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 SEPHS1P49903 392 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 ST5P78524 1137 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 ODF1Q14990 250 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 ZRSR2Q15696 482 aaKnown RBP5.96□□□□□ -1.46
VPS13A-212ENST00000493341 COBLL1Q53SF7 1204 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 HSP90AB4PQ58FF6 505 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms