RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SPAG1Q07617 926 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 TSC1Q92574 1164 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 GMCL1Q96IK5 515 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 BAG1Q99933 345 aaPredicted RBP23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 GLT8D2Q9H1C3 349 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 PCDHA1Q9Y5I3 950 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 LRRC10BA6NIK2 292 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 ARHGAP6O43182 974 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 NDUFB10O96000 172 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 RBM10P98175 930 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 RBM26Q5T8P6 1007 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 FCHSD1Q86WN1 690 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 PNMA5Q96PV4 448 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 GMLQ99445 158 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 DDX25Q9UHL0 483 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 PSMD14O00487 310 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 CCP110O43303 1012 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 RAD17O75943 681 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 KCNA3P22001 575 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 PDIA5Q14554 519 aa23.71■■□□□ 1.39
CCDC88B-208ENST00000492980 TRIM49BA6NDI0 452 aa23.7■■□□□ 1.38
CCDC88B-208ENST00000492980 KCNJ18B7U540 433 aa23.7■■□□□ 1.38
CCDC88B-208ENST00000492980 VIL1P09327 827 aaKnown RBP23.7■■□□□ 1.38
CCDC88B-208ENST00000492980 KCNJ12Q14500 433 aa23.7■■□□□ 1.38
CCDC88B-208ENST00000492980 TCP11X2Q5H9J9 407 aa23.7■■□□□ 1.38
CCDC88B-208ENST00000492980 NUP88Q99567 741 aaPredicted RBP23.7■■□□□ 1.38
CCDC88B-208ENST00000492980 RAB34Q9BZG1 259 aa23.7■■□□□ 1.38
CCDC88B-208ENST00000492980 BLOC1S4Q9NUP1 217 aa23.7■■□□□ 1.38
CCDC88B-208ENST00000492980 TMOD2Q9NZR1 351 aa23.7■■□□□ 1.38
CCDC88B-208ENST00000492980 POTEMA6NI47 508 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 TCP10L2B9ZVM9 353 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 H7C1D1 291 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 CTIFO43310 598 aaKnown RBP23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 STX10O60499 249 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 GCFC2P16383 781 aaKnown RBP23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 DPEP1P16444 411 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 CCT6AP40227 531 aaKnown RBP23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 PMS1P54277 932 aaKnown RBP23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 AMPD3Q01432 767 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 STIM1Q13586 685 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 LARGE2Q8N3Y3 721 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 HAS1Q92839 578 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 ZNF277Q9NRM2 450 aaPredicted RBP23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 STK17AQ9UEE5 414 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L15C9J2P7 530 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L13C9JLJ4 530 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L11C9JVI0 530 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L18D6R9N7 530 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L22D6RA61 530 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L17D6RBQ6 530 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L19D6RCP7 530 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L20D6RJB6 530 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 COPB1P53618 953 aaKnown RBP23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 ASIC1P78348 528 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L24Q0WX57 530 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 USP17L6PQ6QN14 398 aa23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 HERC5Q9UII4 1024 aaKnown RBP23.69■■□□□ 1.38
CCDC88B-208ENST00000492980 ITIH6Q6UXX5 1313 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 CLRN2A0PK11 232 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 AKR1B15C9JRZ8 316 aaPredicted RBP23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 CCDC47Q96A33 483 aaKnown RBP23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 EXOC1Q9NV70 894 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 ZNF70Q9UC06 446 aaPredicted RBP23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 PSMA7O14818 248 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 PDE4DQ08499 809 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 IRF2BP1Q8IU81 584 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 ANKRD20A12PQ8NF67 263 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 KIF18AQ8NI77 898 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 NAP1L4Q99733 375 aaKnown RBP23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 TAB2Q9NYJ8 693 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 HDAC9Q9UKV0 1011 aa23.68■■□□□ 1.38
CCDC88B-208ENST00000492980 KIF13BQ9NQT8 1826 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 A0A1W2PRG0 241 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 N4BP3O15049 544 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 RBL2Q08999 1139 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 DLGAP5Q15398 846 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 SYDE2Q5VT97 1194 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 SV2BQ7L1I2 683 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 DEFB132Q7Z7B7 95 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 SNX29Q8TEQ0 813 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 DHTKD1Q96HY7 919 aaPredicted RBP23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 PANX2Q96RD6 677 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 NUDT12Q9BQG2 462 aa23.67■■□□□ 1.38
CCDC88B-208ENST00000492980 BMP3P12645 472 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 SNAP25P60880 206 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 KRT79Q5XKE5 535 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 TTI2Q6NXR4 508 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 PPFIBP1Q86W92 1011 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 REXO1L1PQ8IX06 675 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 FAM151AQ8WW52 585 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 CDK5RAP3Q96JB5 506 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 AMNQ9BXJ7 453 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 ANO3Q9BYT9 981 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 VPS16Q9H269 839 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 SYNPO2Q9UMS6 1093 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 CNTNAP1P78357 1384 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 MEIS2O14770 477 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 BAG6P46379 1132 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 STK4Q13043 487 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms